Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq2313 194 5e-45 seq3464 82.4 2e-11 >seq2313 Length=433473 Score = 194 bits (214), Expect = 5e-45 Identities = 270/376 (72%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 38861 ATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTC 38920 || ||| |||| |||| ||| || || ||||| ||||| ||| || |||| ||| | Sbjct 249739 ATAGTTCTATGAAACCTTTCACATATGCCATTAGTCTGTGGAGAATTGGCTTTAGTTCTA 249680 Query 38921 GTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 38980 | ||| || |||| | ||| | |||||||||| |||| |||||||||| ||||||| Sbjct 249679 GAATGATCAATGTTTTCTATTCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCA 249620 Query 38981 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAA 39039 ||||| || | || | |||||||| |||||||| | || || | ||| ||||| Sbjct 249619 CAATACTCCGTACCCCTATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAA 249561 Query 39040 GTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATA 39099 |||| | ||| |||| || || | ||| ||||| | ||||| || | || || Sbjct 249560 AAATGGAATGACTCTATCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTA 249501 Query 39100 AAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACC 39159 |||||| | | || ||| || |||||||||| ||| ||||| |||||||| || || Sbjct 249500 AAGTTTAACCATTGCAACTCTAGAATAAGTATCAACAAAAGTTTGCTGATAAATTCGCCC 249441 Query 39160 CACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTAC 39219 | ||||||| || |||||||| | |||||||| || || | ||| || || ||| Sbjct 249440 TATACCTTTGATATTACCCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTG 249381 Query 39220 CGTTTCAATTTCACCA 39235 ||| |||||||||||| Sbjct 249380 CGTCTCAATTTCACCA 249365 >seq3464 Length=263656 Score = 82.4 bits (90), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 39051 CTTTATCATTCAGCATATCCGCAGCACTG-ATAGCGGTCTTCATTGTATAAAGTTTTGCA 39109 || ||||||| | || ||| |||||| | || || || || ||| ||||| || | | Sbjct 261399 CTCTATCATTTAACAAATCTGCAGCAGTATATCGCTGTTTTATTTGCGTAAAGCTTGGTA 261340 Query 39110 AACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTG 39169 | || ||| | |||||||||||||| || || || | || | |||||| Sbjct 261339 CATGCAACTCGAGAATAAGTATCAATAAAAGTCTGCTGGT--------CCTATACCTTTG 261288 Query 39170 AGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATT 39229 | ||| || ||||| | |||||||| || || | ||| || || ||| | ||||||||| Sbjct 261287 ATGTTACCTACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTCAGTTTCAATT 261228 Query 39230 TCACCA 39235 |||||| Sbjct 261227 TCACCA 261222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160089477106320