Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq2313 194 6e-45 seq3464 82.4 3e-11 >seq2313 Length=433473 Score = 194 bits (214), Expect = 6e-45 Identities = 270/376 (72%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 40924 ATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTC 40983 || ||| |||| |||| ||| || || ||||| ||||| ||| || |||| ||| | Sbjct 249739 ATAGTTCTATGAAACCTTTCACATATGCCATTAGTCTGTGGAGAATTGGCTTTAGTTCTA 249680 Query 40984 GTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 41043 | ||| || |||| | ||| | |||||||||| |||| |||||||||| ||||||| Sbjct 249679 GAATGATCAATGTTTTCTATTCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCA 249620 Query 41044 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAA 41102 ||||| || | || | |||||||| |||||||| | || || | ||| ||||| Sbjct 249619 CAATACTCCGTACCCCTATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAA 249561 Query 41103 GTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATA 41162 |||| | ||| |||| || || | ||| ||||| | ||||| || | || || Sbjct 249560 AAATGGAATGACTCTATCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTA 249501 Query 41163 AAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACC 41222 |||||| | | || ||| || |||||||||| ||| ||||| |||||||| || || Sbjct 249500 AAGTTTAACCATTGCAACTCTAGAATAAGTATCAACAAAAGTTTGCTGATAAATTCGCCC 249441 Query 41223 CACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTAC 41282 | ||||||| || |||||||| | |||||||| || || | ||| || || ||| Sbjct 249440 TATACCTTTGATATTACCCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTG 249381 Query 41283 CGTTTCAATTTCACCA 41298 ||| |||||||||||| Sbjct 249380 CGTCTCAATTTCACCA 249365 >seq3464 Length=263656 Score = 82.4 bits (90), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 41114 CTTTATCATTCAGCATATCCGCAGCACTG-ATAGCGGTCTTCATTGTATAAAGTTTTGCA 41172 || ||||||| | || ||| |||||| | || || || || ||| ||||| || | | Sbjct 261399 CTCTATCATTTAACAAATCTGCAGCAGTATATCGCTGTTTTATTTGCGTAAAGCTTGGTA 261340 Query 41173 AACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTG 41232 | || ||| | |||||||||||||| || || || | || | |||||| Sbjct 261339 CATGCAACTCGAGAATAAGTATCAATAAAAGTCTGCTGGT--------CCTATACCTTTG 261288 Query 41233 AGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATT 41292 | ||| || ||||| | |||||||| || || | ||| || || ||| | ||||||||| Sbjct 261287 ATGTTACCTACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTCAGTTTCAATT 261228 Query 41293 TCACCA 41298 |||||| Sbjct 261227 TCACCA 261222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166683090461958