Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq652 134 1e-26 >seq652 Length=419067 Score = 134 bits (148), Expect = 1e-26 Identities = 276/408 (68%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 |||||||| ||||| || || || ||||| || || || | || || || ||| || Sbjct 407050 GTGGTTCAAGTAGACGTGAGCGTCTCCCAAAGTGTGTACAAATTCACCGGGTTTCAAGCC 407109 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || |||||||||||||| ||||| | ||||| ||| ||||| ||||| || || Sbjct 407110 GGTAACGTGAGCGATCATGTAGGTGAGTAAGGCGTACGAAGCTATGTTAAACGGTACGCC 407169 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 ||| |||||||| |||||| || || || || | || || | || | || || || Sbjct 407170 TAAACCCATGTCGGCCGATCTCTGGTAAAGTTGACTTGAAAGTTTACCGTCGGCCACATA 407229 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 || ||| || |||||| || || || ||||| ||| ||||| ||||||||| Sbjct 407230 AAACTGGACCAGACAGTGGCAGGGAGGTAGAGCCATTTTAGGCAGATCTAACGGGTTCCA 407289 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852 |||||||| | | |||||||| | || || || | || ||||||| | Sbjct 407290 AGCGCACATTATCAATCTTCTGTCGTTCGGTTTGGTTTTGATGGATTCGATCAAATTGGT 407349 Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTC-CGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 || |||||| | |||| || || || ||| | || || || || || | Sbjct 407350 CAACTGGTCGACACCCTTACCTCTGTAATCGTAGTTCATATCTACG-TATTCGGCGCCGA 407408 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 | |||||||| ||||| ||||| || || ||||| ||||| || |||| Sbjct 407409 AATGTCTCCATTGGAAACCGTACACAGGTCCCAAATCGCCTTCTTCCC 407456 Score = 134 bits (148), Expect = 1e-26 Identities = 276/408 (68%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 |||| || ||||| ||||| || || ||||| ||||| |||||||| || || || || | Sbjct 407456 GGGAAGAAGGCGATTTGGGACCTGTGTACGGTTTCCAATGGAGACATTTCGGCGCCGAAT 407397 Query 34446 ATCGGGGGAGCGAAGCG-GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 | || | ||| || || || |||| | |||||| || | ||||| Sbjct 407396 A-CGTAGATATGAACTACGATTACAGAGGTAAGGGTGTCGACCAGTTGACCAATTTGATC 407338 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 || || | || || || | |||||||| | | |||||||| ||||||||| Sbjct 407337 GAATCCATCAAAACCAAACCGAACGACAGAAGATTGATAATGTGCGCTTGGAACCCGTTA 407278 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||| ||||| || || || |||||| || ||| || || || || | Sbjct 407277 GATCTGCCTAAAATGGCTCTACCTCCCTGCCACTGTCTGGTCCAGTTTTATGTGGCCGAC 407218 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || | || || | || || || || |||||| |||||||| ||||| || ||||| Sbjct 407217 GGTAAACTTTCAAGTCAACTTTACCAGAGATCGGCCGACATGGGTTTAGGCGTACCGTTT 407158 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 ||||| ||| ||||| | ||||| |||||||||||||| || || ||| || Sbjct 407157 AACATAGCTTCGTACGCCTTACTCACCTACATGATCGCTCACGTTACCGGCTTGAAACCC 407098 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || || | || || || ||||| || || || ||||| |||||||| Sbjct 407097 GGTGAATTTGTACACACTTTGGGAGACGCTCACGTCTACTTGAACCAC 407050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448148883150480