Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq297 91.5 1e-13 >seq297 Length=1033366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| | ||||| || ||||||| | || || || | Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 234347 GATACCATTGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 234404 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| ||||||| ||||| || |||||| | || |||| |||| |||| || || ||| Sbjct 234405 AGCAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTT-TCTGACTAC 234463 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || |||| | ||| |||| ||||| | ||||| || Sbjct 234464 AACATCCAGAAGGAATCCACTCTCCATCTGGTCTTGCGACTCCGTGGTGG 234513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| || ||||| || || || || || || ||||| |||| || || | | Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATC 233205 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| |||||| ||||| |||||||||||| |||| || Sbjct 233206 AGATACCATTGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGAT 233263 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | ||||| ||||||||||||||| | || || | |||| | || || ||| Sbjct 233264 CAGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTAC 233323 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| || | ||| |||| |||||| | ||||| || Sbjct 233324 AACATTCAAAAGGAGTCTACCCTCCATCTGGTCTTGCGTCTCCGTGGTGG 233373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || |||||||| || ||| ||||| | || || ||| | | Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||||| |||||||||||| |||| || ||| Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || |||| || || || ||||||||| | || || | ||| | | | || ||||| ||| Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234010 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||| ||||| | || | ||| | ||||| || Sbjct 234011 ATCCAAAAAGAATCCACTCTGCATCTTGTACTCCGTCTTCGTGGTGG 234057 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||||||||||| ||| ||||| | || || ||| | | Sbjct 233375 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233434 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 233435 GATACTATTGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 233492 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| ||||||||||||||| | || || | |||| | || || |||| Sbjct 233493 AGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACA 233552 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || |||| | ||| | || | ||| | ||||| || Sbjct 233553 ATATCCAGAAGGAATCCACTCTCCATCTTGTACTCCGTCTTCGTGGTGG 233601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355774535238093