Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq297 125 5e-24 seq1037 116 3e-21 seq223 82.4 5e-11 >seq297 Length=1033366 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || || ||||| || || || |||||||| || | Sbjct 233375 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233434 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| ||||| |||||||||||| | || |||||||| Sbjct 233435 GATACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 233494 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| |||||||| |||||||| ||||| | ||||| | || ||||| Sbjct 233495 CAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAAT 233554 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 233555 ATCCAGAAGGAATCCAC 233571 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || || ||||| || || || |||||||| || | Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| |||||||||||| | || |||||||| Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || |||||||| ||||| | ||| || || ||||| ||| Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234010 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| ||||| Sbjct 234011 ATCCAAAAAGAATCCAC 234027 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || || || || ||||| || ||||| | | Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATC 233205 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||| ||||| |||||||||||| | || |||||||| Sbjct 233206 AGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 233265 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||| |||||||| ||||| | ||||| | || ||||| Sbjct 233266 GCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAA 233325 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 233326 CATTCAAAAGGAGTCTAC 233343 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || ||||| || || || ||||| ||||| | | Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| ||||| |||||||||||| | || |||||||| Sbjct 234347 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 234406 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| ||||| ||||||||||| ||||||| ||||| | || |||||| Sbjct 234407 CAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTACAAC 234466 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 234467 ATCCAGAAGGAATCCAC 234483 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || |||||||| || || || || | Sbjct 232691 ATGCAGATCTTCGTAAAAACCCTCACAGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 232750 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || || ||||| |||||| | || |||||||| Sbjct 232751 GACACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 232810 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || ||||||||||| | ||||| | || |||||| Sbjct 232811 CAGAGGTTGATCTTTGCAGGAAAGCAACTGGAAGATGGTCGCACACTTTCTGACTACAAC 232870 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 232871 ATCCAGAAGGAGTCAAC 232887 Score = 114 bits (126), Expect = 9e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || ||||| || || || |||||||| || | Sbjct 234514 AATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTC 234573 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | || ||||| ||||| || ||| | || |||||||| Sbjct 234574 AGATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCA 234633 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||||||||| ||||| | ||| || || ||||| || Sbjct 234634 GCAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAA 234693 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 234694 CATCCAAAAAGAATCCAC 234711 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| |||||||| || ||||| || || | |||||||| | | Sbjct 233603 ATGCAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCA 233662 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| |||||||||||| | || || ||||| Sbjct 233663 GATACCATTGAAAACGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCAG 233722 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || ||||| || ||||| | | | ||| | || |||||| Sbjct 233723 CAGAGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAAC 233782 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 233783 ATCCAGAAGGAATCAAC 233799 >seq1037 Length=250510 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || || || ||||| || |||||||| | | Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | || || |||||| | || |||||||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGA-TCCAGGATAAGGAAGGTATCCCTCCAGATCA 80544 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||||||||| | ||||| | ||||| || || ||||| Sbjct 80545 GCAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAA 80604 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | ||| | || | ||| | ||||||| Sbjct 80605 CATTCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGAGGAGG 80652 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || || || ||||| || ||||| || || | Sbjct 80654 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 80713 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | |||| || || || || |||||| | || |||||||| Sbjct 80714 GATTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80773 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||||||||||||| | ||||||| |||||||| || ||||| Sbjct 80774 CAAAGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAGACTACAAT 80833 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || | ||| | || | ||| || ||||||| Sbjct 80834 ATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGG 80880 >seq223 Length=534358 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||| ||||| || || ||||||||||| || || | Sbjct 233143 AAGATGCAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCT 233202 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || || ||||| || || | || || || Sbjct 233203 TCAGATACCATCGAGAATGTGAAGGC-TAAGATCCAAGACAAGGAGGGCATTCCTCCTGA 233261 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || |||||||| || ||||| | || || | ||| || Sbjct 233262 TCAGCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACACTCTCCGACTA 233321 Query 23787 CAACATACAAAA 23798 |||||| || || Sbjct 233322 CAACATTCAGAA 233333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926143211572