Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq652 208 6e-49 >seq652 Length=419067 Score = 208 bits (230), Expect = 6e-49 Identities = 436/647 (67%), Gaps = 7/647 (1%) Strand=Plus/Plus Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 ||||| | || |||||||||||||||||||| ||||| ||||| || || |||| | Sbjct 407048 ACGTGGTTCAAGTAGACGTGAGCGTCTCCCAAAGTGTGTACAAATTCACCGGGTTTCAAG 407107 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 ||||| |||||||| |||||||| ||||| | | ||| || |||||||| ||||| Sbjct 407108 CCGGTAACGTGAGCGATCATGTAGGTGAGTAAGGCGTACGAAGCTATGTTAAACGGTACG 407167 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330 || | |||||||| |||| |||||||| || |||| || || | || ||| || Sbjct 407168 CCTAAACCCATGTCGGCCGATCTCTGGTAAAGTTGACTTGAAAGTTTACCGTCGGCCACA 407227 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGT 27388 |||||||| | |||||| ||||| ||||||| | ||| || ||| |||| Sbjct 407228 TAAAACTGGACCAGACAGTGGCAGGGAGGTAGAGCCATTTTAGG--CAGATCTAACGGGT 407285 Query 27389 TCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGT 27448 |||| ||||||| || | | ||||| | || ||| | ||||| || | | Sbjct 407286 TCCAAGCGCACATTATCAATCTTCTGTCGTTCGGTTTGGTTTTGATGGATTCGATCAAAT 407345 Query 27449 TTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTC 27508 | || ||| || || ||| | || ||| || |||| || ||| || || | Sbjct 407346 TGGTCAACTGGTCGACACCCTTACCTCTGTAATCGTAGTTCATATCTACGTATTCGGCGC 407405 Query 27509 CGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 27568 ||||||| ||||||||||| |||||||| ||||||| || || ||||||||||| | Sbjct 407406 CGAAATGTCTCCATTGGAAACCGTACACAGGTCCCAAATCGCCTTCTTCCCTGTGAGTCA 407465 Query 27569 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 27628 ||| ||| | | || || |||| ||| | |||||| || || || || | Sbjct 407466 GTCCCAAGGAGTCGAGGTACTCCCTCGAACTGTTACCCGACCAGATGTTCACGCCGTTTT 407525 Query 27629 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 27688 | | |||||| | |||| || ||| ||| ||||| || | || || ||||| Sbjct 407526 TAGCCAACTCTTTCTCGCTTGTCGAACCTTTGATAAACCAAAGTAATTCTTCTACGACAC 407585 Query 27689 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTT---GAGGCCGTACC 27745 | |||||| |||||||| || || | | || |||| || || | | ||| Sbjct 407586 CGCGCCAAAACACCCTCTTAGTAGTCAATAAAGGGAACTCACCGTTTTCCAAACTCCACC 407645 Query 27746 TGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCT 27792 ||| ||||| || || | |||| | |||| || ||||||||| Sbjct 407646 TGGTCTGAGCGCCGAATATAGACAGGGTTCCCACACCGGTCCTGTCT 407692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369415966247429