Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq176 122 1e-22 seq2633 93.3 6e-14 >seq176 Length=640401 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| |||| ||||||||||||| ||| ||||| |||| |||| ||||| || | Sbjct 528376 CCAGTTTCCAGGCGTAGAAATGCATTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGT 528435 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 ||||||| | || || |||||||| || |||||||||||||| |||||||| | | Sbjct 528436 GAATATTAAGTGATTGTGACTGATCGATAAACGCTCCTCTATCAGCTGCCATTTTCAATA 528495 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | || ||||||| |||||||| | ||| || ||| | ||| |||||||| || Sbjct 528496 TCGTTTTTTGAGATATTTCCCAGACAGTCTTATAAATTGATTTTATATCATCAGG 528550 Score = 105 bits (116), Expect = 9e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||| | |||| | | | ||| |||||||||| | || || || ||||| || || Sbjct 542959 CTAGAAAGTTGAGGTTTAGGAGTAGCTGCATTAAACAGAGTAGGGGAAGCATGTGTGAAA 543018 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 ||||||| || |||| ||| || ||||||||| | || || || || | |||||| Sbjct 543019 TATTTTTCCGACAGTAAATTATACGTTTCAATAACGGAATCAATATCATCTCCATGAATA 543078 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA--TTATTTATT- 78554 || || | || | ||| ||||||||||| || | ||||||| ||| | || ||| Sbjct 543079 CCAACAGAAACTCTCATTAACATATGCTGGGGACGTTCAACCACTTTACCTCTTTGATTC 543138 Query 78555 TTCAACAAGTATGATTTTTCCAAAGT-TTTAAAA 78587 |||||||||||||| |||| | ||| | ||||| Sbjct 543139 CTCAACAAGTATGATCTTTCAAGAGTCTGTAAAA 543172 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 ||| ||| || || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529661 AGGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATA 529720 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| | ||||| || || || | |||||||||||| || ||||||||||||||||| Sbjct 529721 AGGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGC 529780 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 77293 | | | |||||||| ||| || |||||| |||| ||| || |||||| Sbjct 529781 AAGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATC 529840 Query 77294 CCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||| | || || || ||| ||| | || ||||| ||||| Sbjct 529841 CCACATATTGGACGGCTTCACACTCCACATGTCATATTGAAGAAT 529885 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 ||||| ||| |||||||| || |||| ||| || ||||| ||||||||||| | |||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||| ||||| | || || || || || |||| || | || | ||||||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || | |||||| || || ||| | ||| ||||| ||||| Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCAT 546424 >seq2633 Length=69334 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| |||||||| || ||||| ||||| ||||||||||| || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 |||| || ||| |||| ||| ||||| ||||| || || |||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTTT 20588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694492883809760