Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq176 123 4e-23 seq2633 102 1e-16 >seq176 Length=640401 Score = 123 bits (136), Expect = 4e-23 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||| | |||| | | | ||| |||||||||||| ||||| || ||||| ||||| Sbjct 542959 CTAGAAAGTTGAGGTTTAGGAGTAGCTGCATTAAACAGAGTAGGGGAAGCATGTGTGAAA 543018 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 ||||||| || |||| ||| || ||||||||||| | || ||||| | |||||| Sbjct 543019 TATTTTTCCGACAGTAAATTATACGTTTCAATAACGGAATCAATATCATCTCCATGAATA 543078 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA--TTATTTATT- 77149 || |||| || | ||| ||||||||||| || ||||| || ||| | || ||| Sbjct 543079 CCAACAGAAACTCTCATTAACATATGCTGGGGACGTTCAACCACTTTACCTCTTTGATTC 543138 Query 77150 TTCAACAAGTATGATTTTTCCAAAGT-TTTAAAA 77182 |||||||||||||| |||| | ||| | ||||| Sbjct 543139 CTCAACAAGTATGATCTTTCAAGAGTCTGTAAAA 543172 Score = 118 bits (130), Expect = 2e-21 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| |||| ||||||||||||| ||| ||||| |||| | || ||||| || | Sbjct 528376 CCAGTTTCCAGGCGTAGAAATGCATTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGT 528435 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 ||||||| | || || |||||||| || |||||||||||||| |||||||| | | Sbjct 528436 GAATATTAAGTGATTGTGACTGATCGATAAACGCTCCTCTATCAGCTGCCATTTTCAATA 528495 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAt 75617 | || ||||||| |||||||| | ||| || ||| | ||| |||||||| || ||| Sbjct 528496 TCGTTTTTTGAGATATTTCCCAGACAGTCTTATAAATTGATTTTATATCATCAGG--GAT 528553 Query 75618 tt 75619 || Sbjct 528554 TT 528555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || |||||||| | |||| || | |||||| ||| ||||| ||||| | ||| Sbjct 529674 TGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAAGGTTCAAATGAT 529733 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || || | ||||||||||||||| ||||| ||||||||||| | | | | Sbjct 529734 TCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCAAGAAGAAGTGAA 529793 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||||||| ||| || |||||| |||| ||| || ||||||||| | || || Sbjct 529794 TTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCCCACATATTGGAC 529853 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || ||| ||| | || ||||| ||||| Sbjct 529854 GGCTTCACACTCCACATGTCATATTGAAGAAT 529885 >seq2633 Length=69334 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| |||||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 |||| || ||| |||||| ||| || || ||||| || || |||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTTT 20588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712753858274880