Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq297 174 4e-38 seq1037 143 6e-29 seq223 122 2e-22 >seq297 Length=1033366 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || ||||| || ||||| || || ||| ||||||| Sbjct 233834 CAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCAGAC 233893 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || || || ||||||||||| || ||||| || ||||| Sbjct 233894 ACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAGCAG 233953 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| |||||||| || ||||||||| | || || | ||||||||| || Sbjct 233954 AGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAACATC 234013 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || ||||||||||| Sbjct 234014 CAAAAAGAATCCACTCTGCATCTTGT 234039 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| |||||||| || || ||||| || ||||| || ||||||| Sbjct 232694 CAGATCTTCGTAAAAACCCTCACAGGCAAGACCATCACTCTTGAGGTCGAGCCCTCAGAC 232753 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 232754 ACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAG 232813 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || |||||||| | || ||| | || || ||| || Sbjct 232814 AGGTTGATCTTTGCAGGAAAGCAACTGGAAGATGGTCGCACACTTTCTGACTACAACATC 232873 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || ||||| || |||||||| ||| ||||| Sbjct 232874 CAGAAGGAGTCAACCCTCCATCTTGTCTTGCGACTC 232909 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| || ||| | || || ||| ||||| Sbjct 233606 CAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCAGAT 233665 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || || || || ||||||||||| || || || || ||||| Sbjct 233666 ACCATTGAAAACGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCAGCAG 233725 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| || |||||||| ||||||||||| |||||| | || || ||| || Sbjct 233726 AGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAACATC 233785 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || |||||||| || ||||| || ||| | ||| Sbjct 233786 CAGAAGGAATCAACTCTCCATCTGGTCTTGCGTCTC 233821 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| || ||||| || || ||| |||||| Sbjct 234518 CAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTCAGAT 234577 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || || || ||||| || || || || || || ||||| Sbjct 234578 ACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 234637 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| || ||||| || ||||||||| | || || | ||||||||| || Sbjct 234638 AGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAACATC 234697 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || ||||||||||| Sbjct 234698 CAAAAAGAATCCACTCTGCATCTTGT 234723 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || ||||| || ||||| || || ||| |||||| Sbjct 233378 CAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCAGAT 233437 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || || ||||||||||| || || || || ||||| Sbjct 233438 ACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAGCAG 233497 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || |||||||| | || ||| | || || || || Sbjct 233498 AGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAATATC 233557 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || |||||||| Sbjct 233558 CAGAAGGAATCCACTCTCCATCTTGT 233583 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| || ||||| || || ||| ||||||| Sbjct 234062 CAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCAGAC 234121 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || ||||| ||||| ||||| || || || || ||||| Sbjct 234122 ACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGCAG 234181 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || ||||| |||||||||||||| || | || || || || Sbjct 234182 AGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAATATC 234241 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || |||||||| Sbjct 234242 CAGAAGGAATCCACTCTCCATCTTGT 234267 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || || || || || ||||| || ||||| Sbjct 233150 CAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATCAGAT 233209 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || || || ||||||||||| || || || || ||||| Sbjct 233210 ACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAGCAG 233269 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || |||||||| | || ||| | || || ||| | Sbjct 233270 AGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAACATT 233329 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || ||||| || ||| | ||| Sbjct 233330 CAAAAGGAGTCTACCCTCCATCTGGTCTTGCGTCTC 233365 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || ||||| || || || |||||||| || || || Sbjct 234290 CAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCTGAT 234349 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || || || ||||||||||| || || || || ||||| Sbjct 234350 ACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAGCAG 234409 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || ||||| || ||||| || | || ||| | || || ||| || Sbjct 234410 AGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTACAACATC 234469 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || ||||| || ||| ||||| Sbjct 234470 CAGAAGGAATCCACTCTCCATCTGGTCTTGCGACTC 234505 >seq1037 Length=250510 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || || ||| | ||||| || ||||||| Sbjct 81091 CAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCCCTCAGAC 81150 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| ||||| || ||||| |||||||| || ||||| Sbjct 81151 ACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAG 81210 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| ||||| | |||||||| | ||| | | || || ||| || Sbjct 81211 AGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACTACAACATC 81270 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| || || ||||| | || || ||| Sbjct 81271 CAAAAAGAATCAACCCTTCACCTTGTACTCAGGCTGAGA 81309 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || || || |||||||| || || ||| |||||| Sbjct 80429 CAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCAGAC 80488 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| ||||| || ||||| |||||||| || ||||| Sbjct 80489 ACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAG 80548 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | ||||| ||||| |||||| | |||||||| | || |||| | || || ||| | Sbjct 80549 AGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCAC-CTTGTCGGACTACAACAT 80607 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || |||||||| | || || ||| Sbjct 80608 TCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGA 80647 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || || || |||||||| || || ||| |||||| Sbjct 84264 CAAATCTTTGTTAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCAGAC 84323 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| || ||||| |||||||| || ||||| Sbjct 84324 ACAATCGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAG 84383 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || ||||| | ||||| || | || | | || || ||| || Sbjct 84384 AGGTTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAGACTACAACATC 84443 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| || || || ||||| | ||||||| Sbjct 84444 CAAAAAGAATCTACCCTTCACCTTGTACTCCGACTCAG 84481 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || || || |||||||| || || ||| |||||| Sbjct 83808 CAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCAGAC 83867 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 83868 ACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAGCAG 83927 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | || || || || |||||| | |||||||| | || |||| | || || ||| | Sbjct 83928 AGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCAC-CTTGTCGGACTACAACAT 83986 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||| || || |||||||| | ||||| || Sbjct 83987 TCAAAAGGAATCTACTCTTCATCTTGTACTTAGACTTAG 84025 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || || || |||||||| || || || ||| || Sbjct 80657 CAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCTGAT 80716 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || ||||| ||||| || ||||| |||||||| || |||||| Sbjct 80717 TCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAA 80776 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| ||||| | ||||| || | ||| | | || || || || Sbjct 80777 AGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAGACTACAATATC 80836 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || |||||||| | || || ||| Sbjct 80837 CAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGA 80875 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || |||||||| || || || ||| ||| Sbjct 84036 CAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCTGAC 84095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || ||||| ||||| || ||||| ||||| || || ||||| Sbjct 84096 TCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGCAG 84155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| |||||| | |||||||| | ||| | | || || || || Sbjct 84156 AGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAGACTACAATATC 84215 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || |||||||| | || || ||| Sbjct 84216 CAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGA 84254 >seq223 Length=534358 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| |||||||| || ||||| Sbjct 233149 CAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCTTCAGAT 233208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| || || || ||||| || ||||| Sbjct 233209 ACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCTGATCAGCAG 233268 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || |||||||| |||||||| | || || |||| || ||| | Sbjct 233269 CGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACACTCTCCGACTACAACATT 233328 Query 178104 CAAAA 178108 || || Sbjct 233329 CAGAA 233333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203418749373246