Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq234 215 5e-51 seq884 91.5 2e-13 >seq234 Length=462357 Score = 215 bits (238), Expect = 5e-51 Identities = 427/619 (69%), Gaps = 10/619 (2%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTA 16856 ||| || ||| |||||||||||| |||||| ||||| |||||| || || ||| || | Sbjct 280930 ATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 280872 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC-TTAATAATACTA 16915 | || | || || |||||||| || || || ||| || || ||| || | | | Sbjct 280871 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 280812 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 | | ||||| | |||| | ||| | | |||||||||||| | || || || Sbjct 280811 AAATC-CGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCA 280753 Query 16976 CAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || || || || || || | || | || | ||| ||||| ||||| || || ||||| | Sbjct 280752 CAGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTAT 280694 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| |||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| Sbjct 280693 TCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAATATACCTTCGAC 280634 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCT 17153 || || || || |||| || || | | | || || | || ||||| Sbjct 280633 GGCAGCGAAAGCTATTACACGCTCACCAAAATTAGC-CGAATGCGATGATATCCAAGCTA 280575 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAAT-CCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| || || || | | ||| |||| ||| || || ||||| ||||||| | Sbjct 280574 GAGCCCATTCCGCCTTCTTC-TTAACCAATGGCATTGTCTCAATGGCATTAAATAGATAT 280516 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || ||| | | || || ||||| || ||||| |||| || |||||||| ||||| Sbjct 280515 TCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGC 280456 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || |||||||| || ||||| || |||||||| || ||||| | ||||||||| || Sbjct 280455 ACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCGGTTATTTGAACCTCT 280396 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | | ||||||||| ||| ||| || || || || || ||| || || ||||| ||| Sbjct 280395 TGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCC 280336 Query 17393 AATATATGCTTAATGAAAT 17411 || | ||| ||| |||| Sbjct 280335 AAAACATGTGAAATAAAAT 280317 >seq884 Length=18444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || || ||||||||||||||||| || |||| |||| ||||| || || | Sbjct 4331 CCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAA-AG-TAGCG 4274 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || |||||| | | |||||| | || ||||||||||| |||| Sbjct 4273 AAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 4214 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 |||| || | || ||||||||||| || || | || ||| ||||| || | ||||| | Sbjct 4213 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAATTCCACA 4154 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 | |||||| || || || || || || Sbjct 4153 AATCATCGTGAGTGCGAGCCTGCTCGAA 4126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531335149400