Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq234 208 8e-49 seq884 86.0 6e-12 >seq234 Length=462357 Score = 208 bits (230), Expect = 8e-49 Identities = 419/610 (69%), Gaps = 26/610 (4%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| || ||| |||||||||||| ||||| |||| || || || || |||||| | Sbjct 280930 ATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 280872 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | || | ||| ||||| | || ||| || ||| || ||| | || || || Sbjct 280871 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 280812 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| || | |||| | || | | ||||||||||||| ||| || || | Sbjct 280811 AAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCAC 280752 Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 | || | ||||| || | || | || | ||| || || || ||||| ||||||||| || Sbjct 280751 AGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 280693 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| ||||||| ||| || || |||||||||||| || || Sbjct 280692 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAATATACCTTCGACG 280633 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA----ATCCATTT 16389 | || ||||| |||| || || | | |||| | | ||| ||||| Sbjct 280632 GCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCG----AATGCGATGATATCCAAGC 280577 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCCTTAAACA-AT 16447 | ||||||| || || | | ||| |||| ||| || || ||||| ||||| | || Sbjct 280576 TAGAGCCCATTCCGCCTTCT-TCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGAT 280518 Query 16448 -TTC----TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 ||| |||||||| ||| || ||||| || || || |||||||| ||||||| Sbjct 280517 ATTCACGTTCTTTTTC------ATCCATGATATATGTTTCGATAAGTAAACTATACATTT 280464 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | ||||| | || || ||||| || ||||| ||||| ||||| ||||| || | ||||| Sbjct 280463 CCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCGGTTATTT 280404 Query 16563 GTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 | || || | ||||||||||| | | |||||||| || ||||| || ||| |||| Sbjct 280403 GAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAA 280344 Query 16623 AAAACGCCAA 16632 |||| ||||| Sbjct 280343 AAAAAGCCAA 280334 >seq884 Length=18444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || || |||||||| ||||| || || ||| |||| ||||| || || | Sbjct 4331 CCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAA-AG-TAGCG 4274 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || ||| || | ||| |||||| | || ||||||||||| |||| Sbjct 4273 AAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 4214 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 |||| ||| | ||||||||||||||||| |||| || ||||| || | ||||| | Sbjct 4213 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAATTCCACA 4154 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 | |||||| || || || || || || Sbjct 4153 AATCATCGTGAGTGCGAGCCTGCTCGAA 4126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400304140600