Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq145 515 5e-141 seq234 255 7e-63 seq132 123 3e-23 >seq145 Length=640502 Score = 515 bits (570), Expect = 5e-141 Identities = 1393/2117 (66%), Gaps = 46/2117 (2%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || || | ||| || || |||||| | ||| || ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||||| ||| ||||| || |||||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || |||| || ||||| | ||||||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 || || ||| | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 53039 TCTGGAAGGTTTG-------TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTT 53091 |||| |||| || | || || || || || | || | ||| || || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 53092 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 53151 || | ||||||||| | || || ||| || |||| | ||| |||| ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 53152 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 ||| || ||||||| ||| | || ||||||||||| || || || || | ||| Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 ||| || || || | |||||||||||| || || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 53272 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 ||| | | || || || | || | ||||| |||| ||||||||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390 || ||| || ||||| ||||| | | || | ||| ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 |||| ||||| || || | | | || | || |||||| || ||||| |||||||||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | || ||||| || || | ||||||| || | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | | ||| | ||||| || |||||||| || || |||||||| || | ||| | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||||| Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 53631 TTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA-- 53687 | || || | ||||| | || || || |||||| |||||||| ||||| |||| Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214 Query 53688 -TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 |||| ||||| ||||| ||||| ||||||||||| ||||| |||| || | ||| | Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||||| | || || || || | ||||| || || || || || | ||| |||||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 ||||| || |||||| || || || ||||| ||| | || || || || || | ||| Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 53867 G-ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | | || || || ||| | | ||||||| | |||| | ||||| || |||| | Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTAC 132449 Query 53926 TCT----TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || ||| ||| | | |||||| ||||| | |||||| |||| | ||||| | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 |||| |||| || || ||||| | ||||| | | ||| ||| ||||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||||| || ||||| ||||| ||||| || | | | || ||||| || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||| ||||| | || || || | | |||||| | ||||| || || |||||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | | || || ||||| || || || || | || | || || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | |||||| |||| || ||| | || || | | | || || | | | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 54282 TGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 | || || || | ||| ||||||||| || || ||| ||||| ||| || | Sbjct 132810 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCAC 132869 Query 54342 ATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || | | || | ||||| || || || | || || ||| | || | || Sbjct 132870 ATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAAG 132928 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 ||| |||| ||| | || | || | ||| |||||| || || ||||| || ||| Sbjct 132929 CAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTA 132988 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG--AT 54518 || | | || | ||||| || || || ||||| | || || | ||| | | Sbjct 132989 AAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCGT 133046 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 |||| || | ||||||||||||||||| || || |||| || || || || || | Sbjct 133047 GAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAA 133106 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || | |||||| || ||| ||||||||||| |||||| | || || ||| || | Sbjct 133107 TCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGC 133166 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGT 54696 | || ||||||||| | || || | | ||| || || | || || | |||| Sbjct 133167 GATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGTAATGGA 133226 Query 54697 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATC 54756 ||| | || ||||| || ||| | ||||| || ||| || | ||||||| Sbjct 133227 AATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAATC 133278 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 | ||||||||| |||| ||| ||||||||||| || | ||||| || || || | Sbjct 133279 AGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATACG 133338 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTG 54875 ||||||| ||| ||||| | ||| || | || || || | ||| || |||| || | Sbjct 133339 TGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCAG 133397 Query 54876 TCAGAGTGTCCAATTCT 54892 | | | ||||||||| Sbjct 133398 CTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 255 bits (282), Expect = 7e-63 Identities = 494/724 (68%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 |||||||| | | ||| | ||| || ||| | || |||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 24069 GCGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 24125 || |||||||| || || | | ||| ||| ||||||| | | ||||||||| Sbjct 280830 GCATCTGTTATTATT--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATCAAATGTTTA 280774 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||||| || || || || ||||| | || || || | || | ||| || || Sbjct 280773 AACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAG 280714 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 280713 AATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCA 280654 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC-- 24303 |||||| || ||||| || || || || || || | | || ||| || || Sbjct 280653 CTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAA 280594 Query 24304 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 || ||| |||||| | ||||||| || |||||||| || || | ||||||||||| Sbjct 280593 TGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 280534 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || |||||||| ||||| | ||| || ||| | | |||||| || || | | | Sbjct 280533 ATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAA 280474 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||||||||| || | ||||| ||||| |||||||| || || || || | ||| Sbjct 280473 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 280414 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 ||||| || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 280413 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 280354 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 || |||||||| ||||| |||||| ||||||| |||| | ||| | Sbjct 280353 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGA 280294 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 |||||||| | || |||||||| | ||| || || || | |||||||| || || || Sbjct 280293 TTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCC 280234 Query 24663 GCCT 24666 |||| Sbjct 280233 GCCT 280230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 24723 ||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| | || Sbjct 278499 CCTTTTTATACATCTTCCATATGTCAGGATATTGAATTGGAAAAATGACAAAACGTTTGA 278440 Query 24724 GATTTTTTGCAAGGATTGGTTCCAT 24748 |||||| | ||| | ||| || || Sbjct 278439 GATTTTCTTTAAGCAATGGCTCTAT 278415 >seq132 Length=759884 Score = 123 bits (136), Expect = 3e-23 Identities = 289/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 54540 ||||| || || ||||||| || || || || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 |||||| || || |||| || || || || || || |||| |||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 |||||||| || |||||| | ||||| ||| || || || |||||||| | || || Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 54661 GAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATAATCGGAGAA 54718 || ||| || | | || || | |||||||| | || |||| || ||| Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGTAATGGTAATCC--GATATAACAGGGGAA 237 Query 54719 TGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGt 54778 || ||||| || ||| | | || ||| | ||||||||| |||| | Sbjct 238 TGAAGGCCATT------ATCTTCATTTTGATGTAGATCAGTTATCACTTCAGAGAATACT 291 Query 54779 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || ||||||||||| || | |||||||| || || | |||||||| ||| ||||| || Sbjct 292 TTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCT 351 Query 54839 GGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 || || | || || || | ||| || ||||||| | | | | ||||||||| ||| Sbjct 352 GGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGT 410 Query 54898 TGTTACTCC 54906 || || || Sbjct 411 GGTGACGCC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705235548400