Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq234 161 1e-34 seq192 109 6e-19 seq15 104 2e-17 seq19 87.8 2e-12 >seq234 Length=462357 Score = 161 bits (178), Expect = 1e-34 Identities = 383/575 (67%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| | |||||||| || || || || |||| | ||| | Sbjct 280230 AGGCGGAAGCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATT 280289 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | || || | |||| ||| || ||||| || || || |||| ||||| || | Sbjct 280290 GGAATCGGTTAAGCGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 280349 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| || || || || |||||| | || || || || | || ||||| || | Sbjct 280350 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 280409 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 |||| || || ||||| || || ||||| || |||||||| || |||||||||||||||| Sbjct 280410 CCGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 280469 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG------TTTGT 116948 || || ||||| || || || | ||| || || || | | | Sbjct 280470 ATAGTTTACTTATCGAAACATA-----TATCAT-GGATGAAAAAGAACGTGAATATCTAT 280523 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || ||||| ||||| ||||| | || || ||||||| || ||||| || |||| Sbjct 280524 TTAATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGA 280583 Query 117009 TCGC-CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 | | ||| ||| || || ||||| | | || ||||| |||||||| || Sbjct 280584 TATCATCGCA-TTCGGCTAATTTTGGTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGT 280642 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 | |||||| ||||| ||||| | ||||||||||| |||||||| || | ||||| Sbjct 280643 ATATTCTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCA 280702 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || | || ||| || || | || || | || || || |||| || || ||||| Sbjct 280703 GGTTTAACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCG 280762 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 || |||| || |||||| | || |||||| Sbjct 280763 GTATTAATGTTTAAACATTTGATACAAAAACCGAG 280797 >seq192 Length=539225 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| |||||||| | || |||||| || Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||| | || | ||| || || || |||| || | ||||| | ||| || Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || |||| | ||||| |||||||| ||| | || || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 >seq15 Length=3179940 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||| ||||| || || |||||||| || || | || || || | Sbjct 2518859 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 2518918 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| || ||||| ||||| || | || Sbjct 2518919 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 2518978 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | ||| |||||||| |||| || | ||||| | |||||| Sbjct 2518979 TCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTA 2519038 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||||| | || |||| Sbjct 2519039 TAACATACAAAAGGAGTCGACATTGCA 2519065 >seq19 Length=2240402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || || ||||| | || |||||||| || || | || || ||| | Sbjct 931745 AAAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACC 931804 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | || | ||||||| || || || || || ||| | || Sbjct 931805 ATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGA 931864 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | || | || ||||| || |||| |||| |||||| | ||| || Sbjct 931865 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTA 931924 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| ||||||||| | || ||||| Sbjct 931925 CAACATTCAGAAGGAGTCGACATTGCAT 931952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || || ||||| ||||| | || || ||| | | Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||||| | || ||||| | | ||||| || || || || | |||| Sbjct 939721 GGATACTATCGAAAACGTTAAAACAAAAA-TCCAAGACAAGGAAGGTATTCCTCCAGACC 939779 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||| |||| || | |||||| | ||||||| Sbjct 939780 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACA 939839 Query 40868 ACATCCAGAAGGA 40880 |||| || ||||| Sbjct 939840 ACATACAAAAGGA 939852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204999270800