Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 >seq1 Length=5869143 Score = 167 bits (184), Expect = 2e-36 Identities = 287/413 (69%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 ||||||||| | ||| || |||||| | ||| || || || | |||| | ||| Sbjct 1470677 ATAAATGTGCGTATCGCCGGTAGTGTGGACAAAATCGCCTGGTTTAAGGCCAGTTAAATG 1470618 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 || |||||||| ||||||| | |||| || || ||||| || || || || ||||| Sbjct 1470617 TGCAATCATACACGTTAATAATGCATAGGATGCTATATTAAATGGGACACCCAGCCCCAT 1470558 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 ||| || | ||||| | || || || |||| || ||||| ||||| Sbjct 1470557 ATCGGCACTGCGCTGATAAAGTTGGCATGACAGCTCATTATTGGCTACATAGAACTGGGC 1470498 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 ||| ||| ||||| || || ||||||||||| | ||||| |||||||| ||| Sbjct 1470497 CAAGCAATGGCAGGGTGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAG 1470438 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | ||| | || |||||| || ||| | ||| || | |||||||||||| |||||||| Sbjct 1470437 AATCATACGTCGATCGGTAGGATTTATAGTTATTGTCTCAATTATCTGCTTCAATTGATC 1470378 Query 97365 AACGCCTTCTCCACCATAATTGT-GC-TTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 || || || ||||||| | | || ||| | |||||| ||| |||||||| | | Sbjct 1470377 GACTCCCTCCGTACCATAACTATCGCGACAAGTGC--GATATTGTGCCCCAAAATGGCGC 1470320 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACC 97475 ||||| || || |||| || || ||||| |||||||| | ||||| ||| || Sbjct 1470319 CATTGAAAACCGTAAATTGGCCCCAGGTCGCCTTCTTCGCGATCACTGAACCC 1470267 Score = 163 bits (180), Expect = 2e-35 Identities = 294/426 (69%), Gaps = 4/426 (1%) Strand=Plus/Minus Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 ||||||||| | ||| || |||||| | ||| || || || | | || | ||| Sbjct 1455907 ATAAATGTGCGTATCGCCGGTAGTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATG 1455848 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 || |||||||| ||||||| | |||| || || ||||| || || || || ||||| Sbjct 1455847 TGCAATCATACACGTTAATAATGCATAGGATGCTATATTAAATGGGACACCCAGCCCCAT 1455788 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 ||| || | ||||| | || || || |||| || ||||| ||||| Sbjct 1455787 ATCGGCACTGCGCTGATAAAGTTGGCATGACAGCTCATTATTGGCTACATAGAACTGGGC 1455728 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 ||| ||| ||||| || || ||||||||||| | ||||| |||||||| ||| Sbjct 1455727 CAAGCAATGGCAGGGTGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAG 1455668 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | ||| | || |||||| || ||| | ||| || | |||||||||||| |||||||| Sbjct 1455667 AATCATACGTCGATCGGTAGGATTTATAGTTATTGTCTCAATTATCTGCTTCAATTGATC 1455608 Query 97365 AACGCCTTCTCCACCATAATTGT-GC-TTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 || || || ||||||| | | || ||| | |||||| ||| |||||||| | | Sbjct 1455607 GACTCCCTCCGTACCATAACTATCGCGACAAGTGC--GATATTGTGCCCCAAAATGGCGC 1455550 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTA 97482 ||||| || || |||| || || ||||| |||||||| | ||||| ||| || ||| Sbjct 1455549 CATTGAAAACCGTAAATTGGCCCCAGGTCGCCTTCTTCGCGATCACTGAACCCGCATTTA 1455490 Query 97483 TCTAAA 97488 || ||| Sbjct 1455489 TCCAAA 1455484 Score = 163 bits (180), Expect = 2e-35 Identities = 294/426 (69%), Gaps = 4/426 (1%) Strand=Plus/Minus Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 ||||||||| | ||| || |||||| | ||| || || || | | || | ||| Sbjct 1460445 ATAAATGTGCGTATCGCCGGTAGTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATG 1460386 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 || |||||||| ||||||| | |||| || || ||||| || || || || ||||| Sbjct 1460385 TGCAATCATACACGTTAATAATGCATAGGATGCTATATTAAATGGGACACCCAGCCCCAT 1460326 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 ||| || | ||||| | || || || |||| || ||||| ||||| Sbjct 1460325 ATCGGCACTGCGCTGATAAAGTTGGCATGACAGCTCATTATTGGCTACATAGAACTGGGC 1460266 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 ||| ||| ||||| || || ||||||||||| | ||||| |||||||| ||| Sbjct 1460265 CAAGCAATGGCAGGGTGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAG 1460206 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | ||| | || |||||| || ||| | ||| || | |||||||||||| |||||||| Sbjct 1460205 AATCATACGTCGATCGGTAGGATTTATAGTTATTGTCTCAATTATCTGCTTCAATTGATC 1460146 Query 97365 AACGCCTTCTCCACCATAATTGT-GC-TTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 || || || ||||||| | | || ||| | |||||| ||| |||||||| | | Sbjct 1460145 GACTCCCTCCGTACCATAACTATCGCGACAAGTGC--GATATTGTGCCCCAAAATGGCGC 1460088 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTA 97482 ||||| || || |||| || || ||||| |||||||| | ||||| ||| || ||| Sbjct 1460087 CATTGAAAACCGTAAATTGGCCCCAGGTCGCCTTCTTCGCGATCACTGAACCCGCATTTA 1460028 Query 97483 TCTAAA 97488 || ||| Sbjct 1460027 TCCAAA 1460022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774680721850