Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq884 96.9 6e-15 seq615 86.0 1e-11 >seq884 Length=18444 Score = 96.9 bits (106), Expect = 6e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 188483 GTATTATACTGGATGTTTAGAGATCAACGTGTACAAGATAATTGGGCTTTAATTTACGCA 188542 ||| | || ||||||| | | ||||| ||||| ||||||||||||||||| | ||||| Sbjct 3172 GTAGTTTATTGGATGTATCGGGATCAGCGTGTCCAAGATAATTGGGCTTTTTTGTACGCT 3231 Query 188543 CAACGATTAGCGTTAAAACTCAAAATACCTCTAAGAATATGCTTTTGTGTCGTGCCAAAA 188602 || || || || |||||||| || ||||||| | |||| |||||| | | || || Sbjct 3232 CAGCGTTTGGCTTTAAAACTTGAACTACCTCTTTGCGTATGTTTTTGTCTTTTACCCAAG 3291 Query 188603 T-TTCACACTACTACTTCTAGACACTTTATGTTTTTAATATCCGGTCTTAAAGAAGTCGC 188661 | | ||| ||| || || || | || ||| | || ||||| | |||||||| | Sbjct 3292 TACTTACA-TACCACGCTAAGGCATTATAAATTTATGTTAACCGGTTTGGAAGAAGTCTC 3350 Query 188662 GGAAGAATGT 188671 ||||||||| Sbjct 3351 TGAAGAATGT 3360 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 ||||| ||| | | ||||| | | ||| |||| || || |||| || |||||||| Sbjct 4141 ACTCACGATGATTTGTGGAATTCAGCTCAACTGCAATTGATGCGAGAGGGTAAAATGCAC 4200 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGAC 189556 ||||||| || |||||||||||||| ||||| | |||||| ||| || ||||||||| Sbjct 4201 GGTTTTTTGCGTATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGAC 4260 Query 189557 GCTTTG 189562 |||||| Sbjct 4261 GCTTTG 4266 >seq615 Length=102487 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 135731 TATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTT 135790 ||||||||||| | || | || | | ||| | || |||||| || ||||| || | | Sbjct 13193 TATGCGATAATCTTCTTATGTGTGTAGTACGTGCTTGGGATTTGAAAAAACCGCTTTTAT 13252 Query 135791 TCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 135850 | || ||||| |||||||| | |||| || ||||| |||||| | || || ||| Sbjct 13253 TTTGCCCTGCTATGAATACACGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 13312 Query 135851 CGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAG 135910 ||||||| | ||| | | |||||| | | |||| ||| | ||| ||||| | Sbjct 13313 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATGTGTGGTG 13372 Query 135911 ACGTAGGAAATGGTGCTATGGCAGAAGTTG 135940 | || ||||| |||||||| ||||||| Sbjct 13373 ATACGGGCAATGGGGCTATGGCCGAAGTTG 13402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923171354388200