Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq192 109 6e-19 seq19 96.9 4e-15 seq316 93.3 5e-14 seq904 91.5 2e-13 seq553 91.5 2e-13 seq58 91.5 2e-13 seq9 91.5 2e-13 seq666 89.7 6e-13 seq396 89.7 6e-13 seq360 89.7 6e-13 seq106 84.2 3e-11 >seq192 Length=539225 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| ||||||||||| | ||| || ||| || ||||||||||| ||||| | Sbjct 278429 TCCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 278370 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | ||||| || ||||| || | ||| |||||||||| || Sbjct 278369 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGG 278310 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||| |||||| ||| | || | ||| | | | | ||||| | ||| | Sbjct 278309 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 278251 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || | |||||||| ||||||||||| || |||||||| || ||||| || Sbjct 278250 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq19 Length=2240402 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||||||| |||||| |||||||||||||| | || || || |||| || Sbjct 933792 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 933733 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||||| || || || | |||||||| || | || | | ||||||||| || Sbjct 933732 AATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC-TG 933674 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | |||| | | | |||||| | || || || | |||||||| || Sbjct 933673 AATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTT 933614 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | || || ||||| |||||||| Sbjct 933613 GCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||||||| |||||| ||||| |||||||| | || || || |||| || Sbjct 931957 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 931898 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| ||||| || || | || ||||| || | || | | ||||| | | || Sbjct 931897 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTAT-CTTG 931839 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | ||| | | | | || || | ||| || || | || || ||||| Sbjct 931838 AATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTT 931779 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 ||| |||| || || |||||||||||||||||| Sbjct 931778 GCCAGTTAATGTTTTCACAAAGATTTGCATTTTT 931745 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| || || ||| | || || | ||| || ||||| || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111 || | ||||||||||| | || | | ||||||| | || ||||||||| | || | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTGGATTTTTGTTTTAACGTT 939734 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || |||||||| || | ||||| ||||| || || | || || || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 43172 AAAGATTTGCATT 43184 ||| ||||||||| Sbjct 939673 AAATATTTGCATT 939661 >seq316 Length=313634 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 313132 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 313073 Query 60126 TACTACCGAGGAT-TGAA 60142 ||||| ||||||| |||| Sbjct 313072 TACTATCGAGGATATGAA 313055 >seq904 Length=17261 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 14863 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 14922 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 14923 TACTATCGAGGAT 14935 >seq553 Length=143938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 39213 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 39272 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 39273 TACTATCGAGGACTG 39287 >seq58 Length=1195752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 969416 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 969475 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 969476 TACTATCGAGGAT 969488 >seq9 Length=3654582 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1484322 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1484381 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1484382 TACTATCGAGGAT 1484394 >seq666 Length=98292 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 42885 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 42944 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 42945 TACTATCGAGGA 42956 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 45859 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 45918 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 45919 TACTATCGAGGA 45930 >seq396 Length=229507 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 132224 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 132283 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 132284 TACTATCGAGGA 132295 >seq360 Length=283720 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8936 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 8877 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8876 TACTATCGAGGA 8865 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9560 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9501 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9500 TACTATCGAGGA 9489 >seq106 Length=843840 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT-CACCAC 60123 ||||| |||| |||||||||||| ||||||||||||||||||||| ||||| || | Sbjct 436247 TCTCCCCGGCGTGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAACGAT 436306 Query 60124 TATACTACCGAGGATT 60139 ||||||| |||||||| Sbjct 436307 TATACTATCGAGGATT 436322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801839277400