Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 6e-14 seq192 91.5 2e-13 seq15 87.8 3e-12 seq11 86.0 9e-12 >seq19 Length=2240402 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | ||| |||||||| | || |||||||| || || || || | Sbjct 939662 TTCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGG 939603 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | || || ||||| ||||| |||||||| ||||| | ||| ||||| || | Sbjct 939602 AGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 939543 Query 146169 GAATTCCTTCTTTATCTTG 146187 | | ||||||||||||||| Sbjct 939542 GGACTCCTTCTTTATCTTG 939524 >seq192 Length=539225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||| | | || || | |||||| || |||||||| ||||||||||| || Sbjct 278429 TCCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 278370 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || ||||| ||||| || |||||||||| |||||| || || || Sbjct 278369 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGG 278310 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| ||||| || || Sbjct 278309 AATTCCCTCTTTGTCCTG 278292 >seq15 Length=3179940 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/227 (67%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || || || || || || ||| ||||| || || | || | | ||| || Sbjct 2519072 TACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTC 2519013 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| |||||||| | ||| ||||| |||||||| ||||||||||| || Sbjct 2519012 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTG 2518953 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||| || ||| || ||||| | || || ||||| Sbjct 2518952 AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTT 2518893 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTT---TATTAGAAAAAT 146291 || || | ||||||| ||| |||||||||| |||| |||||| Sbjct 2518892 GCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTCTAAAAAT 2518846 >seq11 Length=3471450 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 209054 GTAAAAGGAAAAATAGTTGGATTATCTAAAGGATTACACGGATTTCATGTTCATGAATAT 209113 |||| ||| | ||| |||||||||||| |||||||| || ||||||||||| |||| Sbjct 884029 GTAACTGGAGAGATAAATGGATTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTC 883970 Query 209114 GGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAACATTTTAATCCATATAATAGACAA 209173 || || | ||| ||||| || || || || | ||||||||||| | || | | | Sbjct 883969 GGGGACAACACTAACGGTTGCACTTCTGCCGGTGCGCATTTTAATCCTTGCAAAAAAGAG 883910 Query 209174 CATGGAGATATTAGTGATAAAATACATCGTCATGTTGGTGATTTTGGTAATGT 209226 ||||||| | |||| | | |||||| | |||||||| || ||||| Sbjct 883909 CATGGAGCACCCACTGATGA---TGAGCGTCATATCGGTGATTTGGGCAATGT 883860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743505906553600