Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 3e-14 >seq19 Length=2240402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||| || || || || ||||| |||||||| |||||| Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || || |||| ||||| |||||||| || ||||| | || ||||| || ||| Sbjct 931915 AAGGTG-CGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 931857 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||| || || ||| |||||| || | || | ||| | | ||| | Sbjct 931856 AATACCTTCCTTATCTTGAAT-TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAA 931798 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || || |||||||| || | |||||||||||||| ||||| Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||||| ||| | |||| ||| || |||||||||||||| ||| Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||||||| ||||| || || || | ||||||||||| || Sbjct 941590 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 941531 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||||||||| | | | || | ||| | ||||| || Sbjct 941530 ATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCAC 941472 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 |||| ||||| ||||| ||||| | |||||| Sbjct 941471 CTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || |||||||||||||| |||| || | || |||||||| ||||| || || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | ||||||||||| || | | |||||||| || ||||| ||| | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGTTTTAACGTT 939734 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||||| || |||| ||||| ||||| ||||| | |||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 939673 AAATATTTGCAT 939662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063317944800