Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=5869143 Score = 113 bits (124), Expect = 4e-20 Identities = 296/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || |||| || | || || ||||||||| | |||||||| || ||||| Sbjct 1455513 AAGAAGGCGACCTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATC 1455572 Query 20273 TTGACATGAACACAAATTATTTTGG-AC--AAGGAGTAGATCAATTACAAAATGTTATTA 20329 || || | | | | || ||| || | ||||| |||||||| | | | ||| Sbjct 1455573 GC-ACTTGT-CGCGA-TAGTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTG 1455629 Query 20330 ATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 | ||| | | || || | ||| || | || ||| | | | | ||||| | || Sbjct 1455630 AGACAATAACTATAAATCCTACCGATCGACGTATGATTCTGTCCTCTTGGAATCCAGTAG 1455689 Query 20390 ATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTT-TACGTTGCTAAT 20448 || | || |||||| || || || || ||| |||| ||| | || || || || ||| Sbjct 1455690 ATATACCAAAAATGGCCTTACCACCCTGCCAT-TGCTTGGCCCAGTTCTATGTAGCCAAT 1455748 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 ||||| |||| || ||| | ||||| || || |||||||| |||||||| || || Sbjct 1455749 AATGAGCTGTCATGCCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTT 1455808 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 ||||| ||| ||||| | | |||| ||||||||||||| | || | | ||| | Sbjct 1455809 AATATAGCATCCTATGCATTATTAACGTGTATGATTGCACATTTAACCGGCCTTAAACCA 1455868 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTA 20628 || || || |||||||| | || || |||| ||||| | ||||| |||| || Sbjct 1455869 GGCGATTTTGTCCACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCATTG 1455928 Query 20629 AAATTACAGTTAACACGACAACC 20651 ||| || |||||||| |||| Sbjct 1455929 AAAGAGCAATTAACACGCAAACC 1455951 Score = 113 bits (124), Expect = 4e-20 Identities = 296/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || |||| || | || || ||||||||| | |||||||| || ||||| Sbjct 1460051 AAGAAGGCGACCTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATC 1460110 Query 20273 TTGACATGAACACAAATTATTTTGG-AC--AAGGAGTAGATCAATTACAAAATGTTATTA 20329 || || | | | | || ||| || | ||||| |||||||| | | | ||| Sbjct 1460111 GC-ACTTGT-CGCGA-TAGTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTG 1460167 Query 20330 ATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 | ||| | | || || | ||| || | || ||| | | | | ||||| | || Sbjct 1460168 AGACAATAACTATAAATCCTACCGATCGACGTATGATTCTGTCCTCTTGGAATCCAGTAG 1460227 Query 20390 ATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTT-TACGTTGCTAAT 20448 || | || |||||| || || || || ||| |||| ||| | || || || || ||| Sbjct 1460228 ATATACCAAAAATGGCCTTACCACCCTGCCAT-TGCTTGGCCCAGTTCTATGTAGCCAAT 1460286 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 ||||| |||| || ||| | ||||| || || |||||||| |||||||| || || Sbjct 1460287 AATGAGCTGTCATGCCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTT 1460346 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 ||||| ||| ||||| | | |||| ||||||||||||| | || | | ||| | Sbjct 1460347 AATATAGCATCCTATGCATTATTAACGTGTATGATTGCACATTTAACCGGCCTTAAACCA 1460406 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTA 20628 || || || |||||||| | || || |||| ||||| | ||||| |||| || Sbjct 1460407 GGCGATTTTGTCCACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCATTG 1460466 Query 20629 AAATTACAGTTAACACGACAACC 20651 ||| || |||||||| |||| Sbjct 1460467 AAAGAGCAATTAACACGCAAACC 1460489 Score = 113 bits (124), Expect = 4e-20 Identities = 296/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || |||| || | || || ||||||||| | |||||||| || ||||| Sbjct 1470283 AAGAAGGCGACCTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATC 1470342 Query 20273 TTGACATGAACACAAATTATTTTGG-AC--AAGGAGTAGATCAATTACAAAATGTTATTA 20329 || || | | | | || ||| || | ||||| |||||||| | | | ||| Sbjct 1470343 GC-ACTTGT-CGCGA-TAGTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTG 1470399 Query 20330 ATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 | ||| | | || || | ||| || | || ||| | | | | ||||| | || Sbjct 1470400 AGACAATAACTATAAATCCTACCGATCGACGTATGATTCTGTCCTCTTGGAATCCAGTAG 1470459 Query 20390 ATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTT-TACGTTGCTAAT 20448 || | || |||||| || || || || ||| |||| ||| | || || || || ||| Sbjct 1470460 ATATACCAAAAATGGCCTTACCACCCTGCCAT-TGCTTGGCCCAGTTCTATGTAGCCAAT 1470518 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 ||||| |||| || ||| | ||||| || || |||||||| |||||||| || || Sbjct 1470519 AATGAGCTGTCATGCCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTT 1470578 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 ||||| ||| ||||| | | |||| ||||||||||||| | || | | ||| | Sbjct 1470579 AATATAGCATCCTATGCATTATTAACGTGTATGATTGCACATTTAACTGGCCTTAAACCA 1470638 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTA 20628 || || || |||||||| | || || |||| ||||| | ||||| |||| || Sbjct 1470639 GGCGATTTTGTCCACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCATTG 1470698 Query 20629 AAATTACAGTTAACACGACAACC 20651 ||| || |||||||| |||| Sbjct 1470699 AAAGAGCAATTAACACGCAAACC 1470721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399173272553725