Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq15 87.8 1e-12 >seq19 Length=2240402 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || | || ||||| |||| || |||||||||||| ||||| ||| | Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| |||| ||| || ||||| || ||||| ||||| || || || || Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| |||||| ||| || | | | |||| | ||| || Sbjct 933690 ATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 933631 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| |||| || || ||||| |||||||| Sbjct 933630 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || | || ||||| |||| || |||||||||||||||||| ||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| |||| ||| || || || || ||||| || || || || || || Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| || ||| || | | |||| | ||| || Sbjct 933462 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACT 933403 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| |||| || || ||||| |||||||| Sbjct 933402 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 >seq15 Length=3179940 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||||| || |||||| || ||||| |||||| | ||| | || || Sbjct 2519072 TACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTC 2519013 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| || ||||| ||||| || ||||| || ||||| | || || || ||| Sbjct 2519012 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTG 2518953 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||| || | | |||| | ||| || |||| ||||| || || Sbjct 2518952 AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTT 2518893 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| || ||||| || || || |||||||| || Sbjct 2518892 GCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 2518860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064582971305