Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq15 114 1e-20 >seq19 Length=2240402 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || || ||||||||||| |||| || || | ||| Sbjct 933567 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 933508 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| ||||| ||| | || | | ||| ||||| ||| | |||||||| || Sbjct 933507 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 933448 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | | ||| |||||| |||||| ||| | ||||||| | Sbjct 933447 TGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 933388 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||||||| |||||||||||||| Sbjct 933387 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 18135 TCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAG 18194 || || ||||||||||| |||| || || | ||||||||||| ||||| ||| | Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 18195 ATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGT 18254 || | | ||| ||||| ||| | |||||||| || ||| | |||||| | | Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 18255 GCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACA 18314 ||| |||||| |||||| ||| | ||||||| | ||||| ||||||||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 18315 AAAATTTGCAT 18325 ||||||||||| Sbjct 931987 AAAATTTGCAT 931977 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || || ||||| ||||| |||| || || | ||| Sbjct 933795 AGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 933736 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| | || | | || ||||| ||| | |||||||| || Sbjct 933735 TCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 933676 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | ||| ||||| |||||| ||| | ||||||| | Sbjct 933675 TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 933616 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||||||| |||||||||||||| Sbjct 933615 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || |||||||| |||||||||||||||| | ||| | || ||| Sbjct 939642 ACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCT 939583 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| ||| |||| | | ||||||||| || || ||||| ||||| | Sbjct 939582 AACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGA 939523 Query 18237 ATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| ||| || || | ||| ||| || ||||| || | |||||| ||| Sbjct 939522 ATTTTAGTT--TTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTT 939465 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | || |||||||| || || || | |||||||| ||| Sbjct 939464 TCCCAGTCAATGTCTTCACGAAGACCTGCATTTTAAAA 939427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || || ||||||||||| |||| || || | ||| Sbjct 931960 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 931901 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| ||||| ||| | || | | ||| ||||| ||| | ||||||||||| Sbjct 931900 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCT 931841 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | | ||| || || || ||| | || || | Sbjct 931840 TGAATTT-TAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGT 931782 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCA-TTTTTAAACTCT 18336 |||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 931781 TTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTTTTAAAATCT 931737 >seq15 Length=3179940 Score = 114 bits (126), Expect = 1e-20 Identities = 172/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | ||||||| ||| | ||| || || ||||| ||||| |||| Sbjct 2519094 TTATGCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGT 2519035 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| | || | |||||||||||||||||| || | || | | ||||||||| Sbjct 2519034 CGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTG 2518975 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| ||||| ||||| |||||| | | ||| |||||| |||| Sbjct 2518974 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 2518915 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 | ||| | || || ||||||| || | ||||| || |||||||||||||||| | Sbjct 2518914 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATAT 2518855 Query 18334 TCT 18336 ||| Sbjct 2518854 TCT 2518852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333805722725