Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 3e-15 >seq19 Length=2240402 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| ||||| |||||||| || || | || || ||| | Sbjct 931749 ATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 931808 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | |||||| | || ||||| | || || ||| Sbjct 931809 GATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAG 931868 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||| ||||||| || || |||||||| | Sbjct 931869 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 931928 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || | ||||| || |||| ||||||| ||| Sbjct 931929 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGT 931976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| || || ||||| || || ||| | || ||||| | | Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| || |||| || ||| | || ||||| | || || ||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||| ||||||| || || |||||||| | Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || | ||||| || |||| ||||||| ||| Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGT 933583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418292758733600