Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq145 500 1e-136 seq234 293 3e-74 seq132 141 1e-28 >seq145 Length=640502 Score = 500 bits (554), Expect = 1e-136 Identities = 1395/2119 (66%), Gaps = 50/2119 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || || | ||| || || |||||| | ||| || ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||| ||| ||||| || |||||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || |||| || ||||| | ||||||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 || || ||| | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 62277 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTT 62329 |||| |||| || | || || || || || | || | ||| || || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 || | ||||||||| | || || ||| || |||| | ||| | || ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 || || ||||||| ||| | || ||||||||||| || || || || | || Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 ||| || || || | |||||||||||| || || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 62510 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 ||| | | || || || | || | ||||| ||| ||||||||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628 || | |||||| || ||||| ||||| | | || | ||| ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 |||| || || || || | | | || | || |||||| || ||||| |||||||||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 | || |||||||| || | ||||||| || | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | | ||| | ||||| || |||||||| || || |||||||| || | ||| | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| | Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 62869 TTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT--- 62924 | || || | ||||| | || || || |||||| |||||||| || | |||| Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 |||| ||||| ||||| |||| ||||||||||| || || |||| || | ||| | Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | ||||| | || || || || | ||||| || || ||||| || | ||| |||||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 ||||| || |||||| || || || ||||| ||| | ||||| || || || | || Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 63105 G-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163 | | || || || ||| | | | ||||| | |||| | ||||| || | || | Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTAC 132449 Query 63164 TCT----TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || ||| ||| | |||||| || || | |||||| |||| | ||||| | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||| |||| || || ||||| | ||||| | | ||| ||| ||||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | ||||| || ||||| ||||| ||||| || | || | || ||||| || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 |||| ||||| | || || || | | |||||| | ||||| || || |||||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | | || || ||||| || || || || | || | || || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA-GATATAGCCTCCA 63518 | |||||| |||| || ||||| || | | | | |||| || | ||| | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTC-CCT 132808 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 | || || || | ||| |||||||||||| || ||| ||||| ||| || Sbjct 132809 TTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCA 132868 Query 63579 CATCGTTTTA-ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 ||| | | || | ||||| || || || | | || || ||| | || | || Sbjct 132869 CATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAA 132927 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||| |||| ||| | || | || | ||| |||||| || || ||||| || || Sbjct 132928 GCAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGT 132987 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--A 63755 ||| | | || | ||||| || || |||||||| | || || | ||| | Sbjct 132988 AAAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCG 133045 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 ||||| || | ||||||||||||||||| || || |||| || |||||||| || Sbjct 133046 TGAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTA 133105 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || || |||||||| || ||| ||||||||||| |||||| | || || ||| || Sbjct 133106 ATCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCG 133165 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT-TGTT--AACTATATCCATG 63932 || || ||||||||| | ||||| | ||| || || | || ||| | | ||| Sbjct 133166 CGATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGT-AATG 133224 Query 63933 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 63992 | ||| | || ||||| || ||| | ||||| || ||| || ||||| Sbjct 133225 GAAATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAA 133276 Query 63993 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATT 64052 || ||||||||| |||| ||| |||||||| || || | ||||| | || || Sbjct 133277 TCAGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATA 133336 Query 64053 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGC 64111 | ||||||| ||| ||||| | ||| || | || || || | ||| || |||| || Sbjct 133337 CGTGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGC 133395 Query 64112 TGCCAGAGTGTCCAATTCT 64130 || | | | ||||||||| Sbjct 133396 AGCTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 293 bits (324), Expect = 3e-74 Identities = 503/726 (69%), Gaps = 13/726 (2%) Strand=Plus/Minus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||||||| | | ||| | ||| || || ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 33516 GCATTTGTTATAAT-----AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTT 33570 |||| |||||| || ||||| || ||||| ||||||| |||| ||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAATC---CG--TTCTTTACTCGGTTTTTGTATCAAATGTT 280776 Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 ||||||| || || || || ||||||| || || || | || | ||| |||| Sbjct 280775 TAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAG 280716 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 | || || | || ||||||| ||||| || || ||||||||||| |||||||| | Sbjct 280715 AGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGC 280656 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | |||||| || ||||| || ||||| || || || | | ||| ||| || || Sbjct 280655 CACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCG 280596 Query 33751 --TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || ||| |||||| | ||||||| || |||||||| || || | ||||| || | Sbjct 280595 AATGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 280536 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | ||||||||||| ||||| | ||| || ||| | | ||| || ||||| | | Sbjct 280535 CAATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTA 280476 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 ||||||||||||||| || | ||||| ||||| || ||||| || || || || | || Sbjct 280475 AACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAG 280416 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 | ||||| || || || ||| |||||||||| ||||||| ||||| || || |||| Sbjct 280415 CTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCAT 280356 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 34047 | || |||||||| ||||| |||||| ||||||| |||| | ||| Sbjct 280355 CGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACC 280296 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 ||||||||| | || |||||||| | ||| || || || | |||||||| || || | Sbjct 280295 GATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTT 280236 Query 34108 CTGCCT 34113 | |||| Sbjct 280235 CCGCCT 280230 >seq132 Length=759884 Score = 141 bits (156), Expect = 1e-28 Identities = 296/430 (69%), Gaps = 16/430 (4%) Strand=Plus/Plus Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 63778 ||||| || |||||||||| || || || || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 |||||| || || |||| || |||||||| || || ||||||||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 |||||||| || |||||| | ||||| ||| || || || |||||||| ||||||| Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 63899 GAGCTTATCCTTAT-ATTTGTT--AACTATATCCATGGTAATACTTGAAATAATCGGAGA 63955 ||| ||| || | | || ||| | | |||||||| | || |||| || || Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGT-AATGGTAATCC--GATATAACAGGGGA 236 Query 63956 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 ||| ||||| | || | | | || || ||| ||||||||| |||| Sbjct 237 ATGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATAC 290 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 ||| |||||||| || || | ||||||| || || | ||||||| ||| ||||| || Sbjct 291 TTTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTC 350 Query 64076 CGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 || || | || || || | ||| || ||||||| || | | | ||||||||| || Sbjct 351 TGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCG 409 Query 64135 TTGTTACTCC 64144 | || || || Sbjct 410 TGGTGACGCC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800240652400