Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq145 320 2e-82 seq234 277 2e-69 seq689 87.8 2e-12 >seq145 Length=640502 Score = 320 bits (354), Expect = 2e-82 Identities = 1199/1861 (64%), Gaps = 28/1861 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| || | ||| ||||||| ||| | || ||||| | ||||||||| || ||| Sbjct 131324 TCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCGGTT 131383 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || |||||| || |||||||| ||| | | ||| | || |||| | | Sbjct 131384 TTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGTTCA 131443 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | ||| | | |||||||||||| || ||||| || || | || | ||||| Sbjct 131444 GCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCATG 131503 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | || || || ||||||||||||||||| | || ||||||| | | Sbjct 131504 TTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTGGCA 131563 Query 37030 GGTAAATC-TAAATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| | | |||||| | || || || |||| || ||| || || |||| | Sbjct 131564 GGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTA 131623 Query 37087 TTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | |||||| | | | | | | | ||| | | || || |||| || || ||| Sbjct 131624 TCATTCCAAAGGCC-CAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTACGATAAA 131682 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| | ||| | || ||| || ||||| ||| ||||| |||| ||||| || Sbjct 131683 CTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGACTCGTT 131742 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 |||| | ||||||| ||||| || ||||||||||| |||| || | ||| | Sbjct 131743 GTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTGCG 131802 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT 37325 || ||||| | ||||| | ||| || | ||||| ||||| ||| || || | Sbjct 131803 CACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGTAGGCGT 131862 Query 37326 CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTC 37385 || ||||||||||||||| || ||||||||||| ||||| | | | |||||| || Sbjct 131863 TTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTC 131922 Query 37386 ATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGT 37445 || || ||||| ||| || | || ||||| | ||||| || | ||||||||||| Sbjct 131923 GTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATATATTGT 131982 Query 37446 TTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAA 37505 ||| ||||||||| ||||||| || | |||||| ||| | | ||| | || ||| Sbjct 131983 TTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAACGCATTAA 132042 Query 37506 TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 || | | ||||| || || || || || ||||| || || | ||| |||||| Sbjct 132043 AATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATTAGA 132102 Query 37566 TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625 | | | ||| || ||||| ||||||| ||| |||||||| || || || | Sbjct 132103 TTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGTTCCTTGT 132162 Query 37626 TAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATACGTTAT---TATTAACAA 37681 || | || | || | | | | |||| ||| || | || |||| | || | Sbjct 132163 TATAAGCTTTGCAACTTCTTTGAGTTTGT-GAAAATCATATTGTTTATCTGCCGTTACGA 132221 Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATT 37741 | || |||||| ||| ||| | ||||| || || || | ||| || | || ||| Sbjct 132222 ACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACGTATATT 132281 Query 37742 GTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATT 37801 | || |||||||| | ||||| || | || || || | ||| |||||| || Sbjct 132282 CGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTT 132341 Query 37802 TTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC-CTCG 37860 | ||||||| ||||| || || || || || ||||| || | ||| || || Sbjct 132342 TGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGGGCGCTGC 132401 Query 37861 ATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAt--ttttttCTTTGT-T 37917 || || | ||| || | |||| || | ||| | ||| | | || | Sbjct 132402 AT-ATTGCGAACCACAAGTCACGAGCTT---GTATTGTTTTGTTCGCTTTACCCTCGTCT 132457 Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 || |||| ||| || ||||||| ||| | | || | || || || || || ||| Sbjct 132458 TCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCAT 132517 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 | || |||||||||||||| | ||||| || || | || ||| || | ||| Sbjct 132518 TTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGAACAGATCC 132577 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 |||| ||| | ||| |||||| || | | || || || || || ||| ||| Sbjct 132578 GGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCGTATTTTTT 132637 Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCT 38157 | || ||||||| ||||| ||||| |||||||| || |||| || || | | || Sbjct 132638 TTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAGCC 132697 Query 38158 CCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAAC 38217 || || | ||| |||| || || | | ||| | | || || | | | ||| Sbjct 132698 CCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAAACGCAAC 132757 Query 38218 ATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGT 38277 ||||| || | ||| | ||| || | |||| ||| | | ||| || || |||||| Sbjct 132758 ATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTTTTGCTCGT 132817 Query 38278 AT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTT 38335 || | | ||| | | ||||||||||| || || || ||| ||| ||||| | Sbjct 132818 ATGCAATGAATATTTAGA--CCTATTCCACCGGCCGACTTAGAAATTTTAGCACATTGGT 132875 Query 38336 TTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAG 38395 || | | | ||||| || | ||| || || | ||| | || || | Sbjct 132876 CTACAGCCTTCATAATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAAGCAGGACG 132935 Query 38396 ACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455 ||| ||| || | || | || |||||| || || || ||||| | || | Sbjct 132936 ACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAAGTAAC 132995 Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 |||||| |||||| ||||| || | | || || ||| |||||||||| || | Sbjct 132996 GCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCATCGCCGTGAATGCCAA 133055 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAA 38572 || || | ||||| |||||||||||||| || | ||||| |||| || ||||| Sbjct 133056 TAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATC--TTTAA 133113 Query 38573 GTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGT 38632 || || || |||||| ||||| | |||||| || |||| | |||| | ||| | Sbjct 133114 CAAG-TAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGCGATCAT 133172 Query 38633 A 38633 | Sbjct 133173 A 133173 >seq234 Length=462357 Score = 277 bits (306), Expect = 2e-69 Identities = 454/650 (70%), Gaps = 7/650 (1%) Strand=Plus/Minus Query 11504 TTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACC 11563 ||||| || || | || || || | || ||||||||||||| ||||| || ||||| Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 11564 GCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAAC 11623 ||||| | ||||| | || ||| ||| ||| |||| |||||||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAAC 280771 Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683 ||||| |||||| ||||| || || ||||| || | ||| | ||||||||| ||| Sbjct 280770 ATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 280711 Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743 ||||| || ||||| | ||| ||||| |||| ||||||||| | ||| || ||| | Sbjct 280710 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTA 280651 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGC 11801 |||||||| || || || || || || |||| ||| | || ||| | || | ||| Sbjct 280650 AAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGC 280591 Query 11802 TA-GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 | |||||||| | ||||| || || ||||| || || || |||||| || || Sbjct 280590 GATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATG 280531 Query 11861 GCGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 || ||||||| || ||| |||| | | ||| | | |||||| || || | ||||| Sbjct 280530 GCATTAAATAGAT--ATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAAC 280473 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 |||||||||| || || | ||||||||| || |||||||| ||||| || || || || | Sbjct 280472 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 280413 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | || || || |||||| |||| ||||||||||||| ||||||||||| Sbjct 280412 CGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 280353 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | |||||||| || | | |||| ||||| | |||| | | |||| || Sbjct 280352 ATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGAT 280293 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 |||||| || | ||||| || | ||| || || ||| | ||||||||| Sbjct 280292 TCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAA 280243 >seq689 Length=69493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/168 (72%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 |||| |||| |||||||||||| ||| || ||||| || || ||||| || | | Sbjct 34931 TGTATCAAAT-TTTAAACATTAATACCGCTAATTCACAGTGCAAGCCTTCATCGCGGGAT 34873 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || | ||||||||| |||||||| | ||||| | | | ||||| |||| |||||||| Sbjct 34872 ATCATTTCATTAGAGAATGTTAAACTCGGCATTATTTCACGTTTCTTTACTCAAAATATC 34813 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || ||| ||||||||| || || | || || || ||| Sbjct 34812 GAAGCGAAGCTGCCACTAAAGAATATACCTTCGGCGGCAGCGAAAGCT 34765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511886285200