Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq145 509 2e-139 seq234 271 1e-67 seq132 138 1e-27 seq624 84.2 3e-11 >seq145 Length=640502 Score = 509 bits (564), Expect = 2e-139 Identities = 1392/2117 (66%), Gaps = 46/2117 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 || || | ||| || || |||||| | ||| || ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||||| ||| ||||| || |||||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || |||| || ||||| | ||||||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 || || ||| | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 65070 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122 |||| |||| || | || || || || || | || ||||| || || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182 || | ||||||||| | || || ||| || |||| | ||| |||| ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 ||| || ||||||| ||| | || ||||||||||| || || || || | ||| Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 ||| || || || | |||||||||||| || || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 65303 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 65362 ||| | | || || || | || | ||||| |||| ||||||||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 65421 || ||| || ||||| ||||| | | || | ||| ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 |||| ||||| || || | | | || | || |||||| || ||||| |||||||||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 | || ||||| || || | ||||||| || | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601 | | ||| | ||||| || |||||||| || || |||||||| || | ||| | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| | Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 65662 TTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA-- 65718 | || || | ||||| | || || || |||||| |||||||| || | | |||| Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214 Query 65719 -TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 |||| ||||| ||||| |||| ||||||||||| ||||| |||| || | ||| | Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | ||||| | || || || || | ||||| || || || || || | ||| |||||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 ||||| || |||||| || || || ||||| ||| | ||||| || || || | || Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 65898 G-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 | | || || || ||| | | | ||||| | |||| | ||||| || |||| | Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTAC 132449 Query 65957 TCT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 || ||| ||| | | |||||| || || | |||||| |||| | ||||| | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 |||| |||| || || ||||| | ||||| | | ||| ||| ||||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | ||||| || ||||| ||||| |||||| || | | | || ||||| || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||| ||||| | || || || | | |||||| ||||| || || |||||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | | || || ||||| || || || || | || | || || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 | |||||| |||| || ||| | || | | | | || || | | | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 66313 TTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 |||| || || | ||| |||||||||||| || ||| ||||| ||| || | Sbjct 132810 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCAC 132869 Query 66373 ATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 || | | || | ||||| || || || | || || ||| | || | || Sbjct 132870 ATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAAG 132928 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 ||| |||| ||| | || | || | ||| |||||| || || ||||| || ||| Sbjct 132929 CAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTA 132988 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--AT 66549 || | | || | ||||| || || |||||||| | || || | ||| | | Sbjct 132989 AAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCGT 133046 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 |||| || | ||||||||||||||||| || || |||| || || || || || | Sbjct 133047 GAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAA 133106 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 | || |||||||| || ||| ||||||||||| |||||| | || || ||| || | Sbjct 133107 TCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGC 133166 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGT 66727 | || ||||||||| | || || | | ||| || || | || || | |||| Sbjct 133167 GATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGTAATGGA 133226 Query 66728 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 66787 ||| | || ||||| || ||| | ||||| || ||| || ||||||| Sbjct 133227 AATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAATC 133278 Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847 ||||||||| |||| ||| ||||||||||| || | ||||| || || || | Sbjct 133279 AGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATACG 133338 Query 66848 AGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTG 66906 ||||||| ||| ||||| | ||| || | || || || | ||| || |||| || | Sbjct 133339 TGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCAG 133397 Query 66907 CCAGAGTGTCCAATTCT 66923 | | | | ||||||||| Sbjct 133398 CTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 271 bits (300), Expect = 1e-67 Identities = 494/721 (69%), Gaps = 3/721 (0%) Strand=Plus/Minus Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 |||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 || |||||||| || | | ||||| ||||||| | | |||||||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAAC 280771 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 || || || || || ||||| | || || || | || | ||| || || || Sbjct 280770 ATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 280711 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 || | || ||||||| ||||| || || ||||||||||| || || || ||| | Sbjct 280710 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTA 280651 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGT 36329 ||||| || ||||| || || || || || || | | ||| ||| || || | || Sbjct 280650 AAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGC 280591 Query 36330 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 ||| |||||| | ||||||| || |||||||| || || | ||||||||||| || Sbjct 280590 GATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATG 280531 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 |||||||| ||||| | ||| || ||| | | |||||| || || | | |||| Sbjct 280530 GCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAACTA 280471 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||||||||| || | ||||| ||||| |||||||| || || || || | ||| ||| Sbjct 280470 TACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCG 280411 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 || || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 280410 GTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGAT 280351 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 || |||||||| ||||| |||||| ||||||| |||| ||| |||| Sbjct 280350 GCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATTC 280291 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| | || |||||||| | ||| || || || | |||||||| || || || ||| Sbjct 280290 CAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGCC 280231 Query 36689 T 36689 | Sbjct 280230 T 280230 >seq132 Length=759884 Score = 138 bits (152), Expect = 1e-27 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| || |||||||||| || || || || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 |||||| || || |||| || || || || || || ||||||||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 |||||||| || |||||| | ||||| ||| || || || |||||||| |||| || Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 66692 GAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATAATCGGAGAA 66749 || ||| || | | || || | |||||||| | || |||| || ||| Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGTAATGGTAATCC--GATATAACAGGGGAA 237 Query 66750 TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 66809 || ||||| | || | | | || || ||| ||||||||| |||| | Sbjct 238 TGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATACT 291 Query 66810 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || ||||||||||| || | |||||||| || || | |||||||| ||| ||||| || Sbjct 292 TTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCT 351 Query 66870 GGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 || || | || || || | ||| || ||||||| || | | | ||||||||| ||| Sbjct 352 GGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGT 410 Query 66929 TGTTACTCC 66937 || || || Sbjct 411 GGTGACGCC 419 >seq624 Length=93322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 31219 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 31278 ||||| || ||||| ||||| || || ||||| |||||||| || ||||| | ||||| | Sbjct 17294 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTCGCACTTCCCACATAAAAA 17235 Query 31279 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322 || ||||||| | ||| ||||||||||| | |||||||| Sbjct 17234 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 17191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154659112200