Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq145 509 2e-139
seq234 271 1e-67
seq132 138 1e-27
seq624 84.2 3e-11
>seq145
Length=640502
Score = 509 bits (564), Expect = 2e-139
Identities = 1392/2117 (66%), Gaps = 46/2117 (2%)
Strand=Plus/Plus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
|| || | ||| || || |||||| | ||| || ||||| | |||||| ||||| ||
Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||||| ||| ||||| || |||||||| ||| | || ||| |||||| ||
Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| |||| || ||||| | ||||||||||| ||||| || || || | || |||||
Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069
|| || ||| | | ||| | ||||||||||| |||||||| | | || |||
Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557
Query 65070 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122
|||| |||| || | || || || || || | || ||||| || || ||
Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616
Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182
|| | ||||||||| | || || ||| || |||| | ||| |||| |||||
Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676
Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242
||| || ||||||| ||| | || ||||||||||| || || || || | |||
Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736
Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302
||| || || || | |||||||||||| || || || ||||| || || |||| |||
Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796
Query 65303 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 65362
||| | | || || || | || | ||||| |||| ||||||||| ||||| |
Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856
Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 65421
|| ||| || ||||| ||||| | | || | ||| |||
Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915
Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481
|||| ||||| || || | | | || | || |||||| || ||||| ||||||||||
Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975
Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541
| || ||||| || || | ||||||| || | ||| || | ||||||
Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035
Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601
| | ||| | ||||| || |||||||| || || |||||||| || | ||| |
Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095
Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661
|||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| |
Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155
Query 65662 TTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA-- 65718
| || || | ||||| | || || || |||||| |||||||| || | | ||||
Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214
Query 65719 -TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777
|||| ||||| ||||| |||| ||||||||||| ||||| |||| || | ||| |
Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274
Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837
| ||||| | || || || || | ||||| || || || || || | ||| ||||||
Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334
Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897
||||| || |||||| || || || ||||| ||| | ||||| || || || | ||
Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394
Query 65898 G-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956
| | || || || ||| | | | ||||| | |||| | ||||| || |||| |
Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTAC 132449
Query 65957 TCT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012
|| ||| ||| | | |||||| || || | |||||| |||| | ||||| |
Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509
Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072
|||| |||| || || ||||| | ||||| | | ||| ||| ||||| |||||| |
Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569
Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132
| ||||| || ||||| ||||| |||||| || | | | || ||||| || || |
Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629
Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192
|||| ||||| | || || || | | |||||| ||||| || || |||||||| |
Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689
Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252
| | | | || || ||||| || || || || | || | || || || | |
Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749
Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312
| |||||| |||| || ||| | || | | | | || || | | | ||
Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809
Query 66313 TTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372
|||| || || | ||| |||||||||||| || ||| ||||| ||| || |
Sbjct 132810 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCAC 132869
Query 66373 ATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431
|| | | || | ||||| || || || | || || ||| | || | ||
Sbjct 132870 ATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAAG 132928
Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491
||| |||| ||| | || | || | ||| |||||| || || ||||| || |||
Sbjct 132929 CAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTA 132988
Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--AT 66549
|| | | || | ||||| || || |||||||| | || || | ||| | |
Sbjct 132989 AAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCGT 133046
Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609
|||| || | ||||||||||||||||| || || |||| || || || || || |
Sbjct 133047 GAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAA 133106
Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669
| || |||||||| || ||| ||||||||||| |||||| | || || ||| || |
Sbjct 133107 TCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGC 133166
Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGT 66727
| || ||||||||| | || || | | ||| || || | || || | ||||
Sbjct 133167 GATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGTAATGGA 133226
Query 66728 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 66787
||| | || ||||| || ||| | ||||| || ||| || |||||||
Sbjct 133227 AATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAATC 133278
Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847
||||||||| |||| ||| ||||||||||| || | ||||| || || || |
Sbjct 133279 AGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATACG 133338
Query 66848 AGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTG 66906
||||||| ||| ||||| | ||| || | || || || | ||| || |||| || |
Sbjct 133339 TGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCAG 133397
Query 66907 CCAGAGTGTCCAATTCT 66923
| | | | |||||||||
Sbjct 133398 CTAAATTATCCAATTCT 133414
>seq234
Length=462357
Score = 271 bits (300), Expect = 1e-67
Identities = 494/721 (69%), Gaps = 3/721 (0%)
Strand=Plus/Minus
Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031
|||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| |
Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891
Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091
||||| || || | | ||||| | ||| | || | ||| |||| |||||| ||
Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831
Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151
|| |||||||| || | | ||||| ||||||| | | ||||||||||||
Sbjct 280830 GCATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAAC 280771
Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211
|| || || || || ||||| | || || || | || | ||| || || ||
Sbjct 280770 ATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 280711
Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271
|| | || ||||||| ||||| || || ||||||||||| || || || ||| |
Sbjct 280710 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTA 280651
Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGT 36329
||||| || ||||| || || || || || || | | ||| ||| || || | ||
Sbjct 280650 AAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGC 280591
Query 36330 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388
||| |||||| | ||||||| || |||||||| || || | ||||||||||| ||
Sbjct 280590 GATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATG 280531
Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448
|||||||| ||||| | ||| || ||| | | |||||| || || | | ||||
Sbjct 280530 GCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAACTA 280471
Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508
||||||||||| || | ||||| ||||| |||||||| || || || || | ||| |||
Sbjct 280470 TACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCG 280411
Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568
|| || || || ||| |||||||||| ||||||| ||||| || || || ||
Sbjct 280410 GTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGAT 280351
Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628
|| |||||||| ||||| |||||| ||||||| |||| ||| ||||
Sbjct 280350 GCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATTC 280291
Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688
||||| | || |||||||| | ||| || || || | |||||||| || || || |||
Sbjct 280290 CAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGCC 280231
Query 36689 T 36689
|
Sbjct 280230 T 280230
>seq132
Length=759884
Score = 138 bits (152), Expect = 1e-27
Identities = 293/429 (68%), Gaps = 14/429 (3%)
Strand=Plus/Plus
Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 66571
||||| || |||||||||| || || || || | ||||| || | || ||||||||
Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59
Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631
|||||| || || |||| || || || || || || ||||||||||| || |||
Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119
Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691
|||||||| || |||||| | ||||| ||| || || || |||||||| |||| ||
Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179
Query 66692 GAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATAATCGGAGAA 66749
|| ||| || | | || || | |||||||| | || |||| || |||
Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGTAATGGTAATCC--GATATAACAGGGGAA 237
Query 66750 TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 66809
|| ||||| | || | | | || || ||| ||||||||| |||| |
Sbjct 238 TGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATACT 291
Query 66810 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869
|| ||||||||||| || | |||||||| || || | |||||||| ||| ||||| ||
Sbjct 292 TTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCT 351
Query 66870 GGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928
|| || | || || || | ||| || ||||||| || | | | ||||||||| |||
Sbjct 352 GGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGT 410
Query 66929 TGTTACTCC 66937
|| || ||
Sbjct 411 GGTGACGCC 419
>seq624
Length=93322
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 31219 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 31278
||||| || ||||| ||||| || || ||||| |||||||| || ||||| | ||||| |
Sbjct 17294 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTCGCACTTCCCACATAAAAA 17235
Query 31279 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322
|| ||||||| | ||| ||||||||||| | ||||||||
Sbjct 17234 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 17191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658154659112200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |