Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq145 140 3e-28 seq192 118 1e-21 seq19 118 1e-21 seq15 107 2e-18 >seq145 Length=640502 Score = 140 bits (154), Expect = 3e-28 Identities = 443/678 (65%), Gaps = 23/678 (3%) Strand=Plus/Plus Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 || ||||| |||||||||||| || ||||| || || | || || ||||| || Sbjct 131726 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCT 131785 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTG-ACCAGTC 153247 || ||||| ||||| || | ||| | |||| |||| | |||| || | | |||| | Sbjct 131786 ACCAGCAAAGAATTGCGCACTCCATAATTTTTAATGT-CGTCTTTAAGAGCGGACCAATT 131844 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||||| |||||| | || ||||| ||| ||||| | || |||| ||| || Sbjct 131845 CCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGG 131904 Query 153308 GCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365 ||||| || | || ||||| | | ||| | |||| || ||||||| || Sbjct 131905 ACTACCTTCATATGTTTCGTACGGACCGTATTGTTTG--GCCAATTGACAACTGGCTTCT 131962 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT---CG 153422 | || | | ||| | ||||| |||| ||||| || ||| | |||||| || Sbjct 131963 AAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGGCCAGCATTTTCG 132019 Query 153423 CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCT 153482 || |||| || |||| | | | ||| || || || ||||| | ||| || || Sbjct 132020 CTTTCGTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCG 132079 Query 153483 ATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCG 153542 || |||||||| || | |||||||||| | || | | |||||| ||||| ||| Sbjct 132080 ATTGGACGATGACGTAAATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCG 132139 Query 153543 ATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCA 153602 || ||||| || | | | | | | || | || | | ||||||||| Sbjct 132140 ATTATTTTGTTGAGGTTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCA 132199 Query 153603 AAC-GTT------CCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAAC 153655 | ||| || ||| | ||||| ||| |||| || |||| |||||||| Sbjct 132200 TATTGTTTATCTGCCGTTACGAACATATTCA---ACG-CAATTGATGCCAGATTGCAAAC 132255 Query 153656 GGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 153715 || |||| || | | ||||| || ||||| | |||||| || ||||||||||| Sbjct 132256 TGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTAT 132315 Query 153716 CAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGG 153775 ||| ||| |||||| |||||||||||||||||||| ||||| |||||||| || Sbjct 132316 AGTGCCAACATTCTGTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGG 132375 Query 153776 TGTGCCGGTTTCGGCTTG 153793 || ||||| || |||| Sbjct 132376 AGTTCCGGTCTCCACTTG 132393 >seq192 Length=539225 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| |||||||| || | || | || || ||||||||||| ||||||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | || || || || | |||| |||||||| ||||| || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | ||||| | ||| | ||||| | ||| || || Sbjct 278308 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 278250 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | |||||||| || || |||||| Sbjct 278249 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 278201 >seq19 Length=2240402 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 || ||||| ||||| || || || ||||| | ||||| | |||||| |||||| || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TG 139692 |||| ||| ||||| || ||||| || ||||| ||||| ||||||| |||||| | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTT-GTTTTAACGTT 939734 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 ||| | || || | | |||||||| | || | ||| || |||||||| ||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 139753 GAATATTTGCAT 139764 ||||||||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| |||||| || |||| |||||| | || || ||| Sbjct 933552 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 933493 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||| |||||||||||| || || || ||||| ||||| ||| | || | || Sbjct 933492 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC-TTGAATCTTGGCCTT 933434 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||||| ||||| || || | ||| | |||||||| ||||| || Sbjct 933433 GACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGT 933374 Query 139747 TTTTACGAATATTTGCATA 139765 ||| || || ||||||||| Sbjct 933373 TTTGACAAAAATTTGCATA 933355 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCAT 139631 |||| || |||||||| |||||| || |||| |||||| | || || |||||| Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 139632 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGC 139690 | |||| |||||||||||| || || || ||||| ||||| ||| | || | || | Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC-TTGAATCTTGGCCTTGACG 932051 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| | ||||||| ||||| || || | ||| | |||||||| ||||| ||||| Sbjct 932050 TTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTG 931991 Query 139751 ACGAATATTTGCATA 139765 || || ||||||||| Sbjct 931990 ACAAAAATTTGCATA 931976 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| |||||| || |||| |||||| | || || ||| Sbjct 931945 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 931886 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| |||||||||||| || || || ||||| || || ||| |||| | ||| Sbjct 931885 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATC-TTGAATTTTAGCTTT 931827 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | || || | || || || || | || | || ||||| || || || Sbjct 931826 AACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGT 931767 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || |||||||| Sbjct 931766 TTTCACAAAGATTTGCAT 931749 >seq15 Length=3179940 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| |||||||| ||| Sbjct 2519090 GCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGA 2519031 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | ||||| | ||||| ||||| | |||| |||||| ||||| |||| Sbjct 2519030 TAACGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAG 2518972 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | ||||||||||| || ||| |||| | || | | ||| | ||||||| ||||| Sbjct 2518971 GAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 2518913 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 2518912 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050327236000