Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq145 563 1e-155 seq234 282 6e-71 seq132 141 1e-28 >seq145 Length=640502 Score = 563 bits (624), Expect = 1e-155 Identities = 1407/2117 (66%), Gaps = 46/2117 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || || | ||| || || |||||| | ||| || ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||| ||| ||||| || || ||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || |||| || ||||| | ||||||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 || || ||| | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 78949 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001 |||| |||| || | || || || || || | || ||||| || || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || | |||||||| | || || ||| || |||| | ||| |||| ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 ||| || ||||||| ||| | || ||||||||||| || ||||| || | || Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 || || || || | |||||||||||| || || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 79182 ATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 ||| | | || || | | || | ||||| |||| ||||| ||| ||||||| Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCCTGTGT 79300 || || ||| | ||||||||| || ||||| |||||| | | | | ||| | Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 ||||||| || || || | | || ||| |||| |||||| || ||||| || ||||||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 | || ||||| ||||| | ||||| | || | | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | | ||| | ||||| || |||||||| || || |||||||| || | ||| | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| | Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 79541 TCCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT--- 79596 |||| ||| | ||||| | || || || |||||| |||||||| || || |||| Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214 Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 |||| ||||| |||||||| | ||||||||||| ||||| |||| || | ||| | Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||||| | ||||| || || | |||||| || || || || || | ||| |||||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 ||||| || |||||| || || || ||||| ||| | ||||| || || || | || Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 79777 G-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC 79835 | | || || || ||| | | | ||||| | |||| | |||| || |||| | Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTAC 132449 Query 79836 TCT----TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 || ||| |||| | | || ||| || || | |||||| |||| || || || | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 |||| |||| | || ||||| | ||||| | ||||| ||| |||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | ||||| || ||||| ||||| ||||| || | | | || |||||| || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||| ||||| | || || || | | |||||| | ||||| || || |||||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | | ||||| ||||| || || || || | || | || || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | |||||| |||| || ||| | || | | | | || || | | | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 | || || || | ||| |||||||||||| || ||| ||||| ||| || | Sbjct 132810 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCAC 132869 Query 80252 ATCGTTTTA-ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 || | | || | ||||| || || || | | || || ||| | || | || Sbjct 132870 ATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAAG 132928 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 ||| |||| ||| | || | || | ||| |||||| || || ||||| || ||| Sbjct 132929 CAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTA 132988 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--AT 80428 || | | |||| ||||| || || |||||||| | ||| || | ||| | | Sbjct 132989 AAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCGT 133046 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 |||| || | ||||||||||||||||| || || |||| || || || || ||| | Sbjct 133047 GAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAA 133106 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | || ||||||||||| ||| ||||||||||| |||||| | || || ||| || | Sbjct 133107 TCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGC 133166 Query 80549 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGT 80606 | || ||||||||| | || || | | ||| || || | || || | |||| Sbjct 133167 GATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGTAATGGA 133226 Query 80607 GATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 80666 || | || ||||| || ||| | ||||| || ||| || ||||||| Sbjct 133227 AATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAATC 133278 Query 80667 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 80726 ||||||||| |||| ||| |||||||| || || | ||||| || || || | Sbjct 133279 AGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATACG 133338 Query 80727 GGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTG 80785 ||||||||||| ||||| | || || | || || || | ||| || |||| || | Sbjct 133339 TGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCAG 133397 Query 80786 CCAGAGTGTCCAATTCT 80802 | | | | ||||||||| Sbjct 133398 CTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 282 bits (312), Expect = 6e-71 Identities = 500/724 (69%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 49894 GCATCTGTTATAATAGATCTAA---CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 49950 ||||||||||| || || || | ||| ||| ||||||| || | ||||||||| Sbjct 280830 GCATCTGTTATTATT--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATCAAATGTTTA 280774 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||| || || || || ||||||| || || || | || | ||| || || Sbjct 280773 AACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAG 280714 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 280713 AATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCA 280654 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-- 50128 |||||| || ||||| || || || || || | | | ||| ||| || | || Sbjct 280653 CTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAA 280594 Query 50129 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || ||| |||||| | ||||||| || |||||||| || || | ||||| || || Sbjct 280593 TGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 280534 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||||||||| ||||| | ||| || ||| | | ||| || ||||| | | | Sbjct 280533 ATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAA 280474 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||||||||||||| || | ||||| ||||| || ||||| || || || || | ||| Sbjct 280473 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 280414 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||||| || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 280413 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 280354 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || |||||||| ||||| |||||| |||||||| |||| | ||| | Sbjct 280353 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGA 280294 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 |||||||| | || |||||||| | ||| || || || | |||||||| || || || Sbjct 280293 TTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCC 280234 Query 50488 GCCT 50491 |||| Sbjct 280233 GCCT 280230 >seq132 Length=759884 Score = 141 bits (156), Expect = 1e-28 Identities = 294/429 (69%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCAT 80450 ||||| || |||||||||| || || || || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 |||||| || || |||| || || || || ||| || |||||||||||||| ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 |||||||| || |||||| | ||||| ||| || || || |||||||| |||| || Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 80571 GAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTGATACTTGAAATAATCGGAGAA 80628 || ||| || | | || || | ||||| || | || |||| || ||| Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGTAATGGTAATCC--GATATAACAGGGGAA 237 Query 80629 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 || ||||| | || | | | || || ||| ||||||||| |||| | Sbjct 238 TGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATACT 291 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || |||||||| || || | |||||||| || || | ||||||||||| ||||| ||| Sbjct 292 TTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCT 351 Query 80749 GGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 || || | || || || | ||| || ||||||| || | | | ||||||||| ||| Sbjct 352 GGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGT 410 Query 80808 TGTTACTCC 80816 || || || Sbjct 411 GGTGACGCC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249002716200