Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq234 268 9e-67 >seq234 Length=462357 Score = 268 bits (296), Expect = 9e-67 Identities = 487/708 (69%), Gaps = 10/708 (1%) Strand=Plus/Minus Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||||||||| || | ||| |||| | | || ||||||| |||| || | ||||| Sbjct 280945 TTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTCAT 280886 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || |||| | || || | | || ||||| |||||||| || || || || Sbjct 280885 GCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATC 280826 Query 13811 TTTTATAATAATTGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 | |||| || || || |||| || ||| || | | | | ||||||||| || Sbjct 280825 TGTTATTAT--TTCCAA-AATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACAT 280769 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| |||||| ||||| || | ||| ||||| | || | ||| || || ||||| Sbjct 280768 TAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGT 280709 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 ||| |||||||| | ||| ||||| |||| ||||||||| | ||| || || ||| Sbjct 280708 TAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAA 280649 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||| || || || ||||| || ||||||| || || ||||| || | Sbjct 280648 GAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGCGA 280589 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 |||||||| | ||||||||| | || || |||| || |||||| ||||| || Sbjct 280588 TGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGC 280529 Query 14108 ATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 |||||||| |||||| |||| ||| | | ||| || |||| || |||||||| ||| Sbjct 280528 ATTAAATAGATATTCACGTTCTTTTTCATCCATGATAT--ATGTTTCGATAAGTAAACTA 280471 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| ||||| | |||||||| || || ||||||||||||||||| | |||||| Sbjct 280470 TACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCG 280411 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||| || || | |||||| ||| | ||||| |||||||| |||||||| Sbjct 280410 GTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGAT 280351 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || |||||||| ||||| | | | |||||| | | || | | | | | ||| Sbjct 280350 GCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATTC 280291 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||||| | || ||||| ||||| || || ||| | ||||||||| Sbjct 280290 CAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAA 280243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479714777497000