Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq234 257 2e-63 >seq234 Length=462357 Score = 257 bits (284), Expect = 2e-63 Identities = 382/540 (71%), Gaps = 4/540 (1%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||||||| ||||| |||||| ||||| || | ||| ||||| | || | ||| Sbjct 280780 ATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTC 280721 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || || |||||||| |||||||| | ||| ||||| |||| ||||||||| | |||||| Sbjct 280720 ATTAGAGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAA 280661 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 || ||||||||| || || || ||||| || ||||||| || || ||||| Sbjct 280660 GCTGCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATT 280601 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 || | ||||||||| | ||||||||| | || || |||| || ||| Sbjct 280600 AGCCGAATGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCAT 280541 Query 13884 TGTTTCGATTGCATTGAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCA 13941 ||| || || ||||| |||| || ||| |||| ||| | | ||| || |||| || Sbjct 280540 TGTCTCAATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATAT--ATGTTTCG 280483 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 |||||||| ||||||||||| ||||| | ||||| || || || |||||||||||||| Sbjct 280482 ATAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAG 280423 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | |||||| | ||| ||||| | |||||| ||| | || || ||||||||| Sbjct 280422 CAACGAGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACA 280363 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 |||||||| || |||||||| ||||| | | | |||||| | | || | | | Sbjct 280362 ATACCATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCG 280303 Query 14122 TTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 | | ||||||||| | | || ||||| ||||| || || ||| | ||||||||| Sbjct 280302 CTTAACCGATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAA 280243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478575608896200