Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq145 459 4e-124 seq234 262 5e-65 seq132 132 6e-26 >seq145 Length=640502 Score = 459 bits (508), Expect = 4e-124 Identities = 1383/2120 (65%), Gaps = 52/2120 (2%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || || | ||||||||| |||||| | ||| | ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||||| ||| ||||| || |||||||| ||| | || ||| ||| ||||| Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||| ||| ||||| | || |||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031 || || ||| | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 71032 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 |||| |||| || | || || || || || | || ||| | || ||||| Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | |||||||| | || || ||| || |||| | |||| |||| ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 ||| || ||||||| ||| | || ||||||||||| || || || || | || Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 ||| || || || | |||||||||||| || || || ||||| || || |||| | | Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 71265 ATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 ||| | | |||| | || | ||||| |||| ||||||||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGCAT 71383 || || || |||||| | | | | ||| ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 |||| ||||| || || | || || ||| | || |||||| || ||||| || || |||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | || ||||| ||||| | ||||| | || | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | | ||| | ||||| || |||||||| ||||| |||||||| || | || | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| | Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 71624 TTCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA-- 71680 | || ||| | ||||| | || || || |||||| |||||||| || |||| Sbjct 132156 TCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCC 132214 Query 71681 -TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 |||| |||| ||||| |||| ||||||||||| ||||| |||| || | ||| Sbjct 132215 GTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGAC 132274 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | ||||| | ||||| || || | ||||| || || || || || | ||| |||||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 ||||| || |||||| || || || ||||| || | ||||| || || || | || Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 71860 G-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC 71918 | | || || || ||| | | | ||||| | |||| | || | || |||| | Sbjct 132395 GCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATTGTTTTGT----TCGCTTTAC 132449 Query 71919 TCT----TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 || ||| |||| | | || ||| || || | |||||| || | | || || | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 |||| |||| || || ||||| | ||||| | ||||| | | |||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 | ||||| || ||||| ||||| ||||| || | | | || |||||| || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 |||| ||||| | || || || | | |||||| | ||||| || || |||||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | | | ||||| ||||| || || || || | || | || || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | |||||| |||| || ||| | || || | | | || || | | | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 72275 TGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 | || || || | || ||| |||||||||||| || ||| ||||| ||| || Sbjct 132810 TTGCTCGTATGCAATG--AATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGC 132867 Query 72333 GCATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 ||| | | || | ||||| || || || | || || ||| | || | | Sbjct 132868 ACATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGA 132926 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | ||| |||| ||| | || | || | ||| |||||| || || ||||| || | Sbjct 132927 AGCAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAG 132986 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG-- 72509 |||| | | |||| ||||| || || |||||||| | ||| || | ||| | Sbjct 132987 TAAAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCC 133044 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || | |||||||||||||||||||| || |||| || || || || ||| Sbjct 133045 GTGAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATT 133104 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || || |||||||| || ||| ||||||||||| |||||| | || || ||| || Sbjct 133105 AATCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATC 133164 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT-TGTT--AACTATATCCAT 72686 || || ||||||||| | ||||| | | ||| || || | || ||| | | || Sbjct 133165 GCGATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGT-AAT 133223 Query 72687 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 || || | || ||||| || ||| | ||||| || ||| || |||| Sbjct 133224 GGAAATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAA 133275 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 ||| ||||||||| |||| ||| |||||||| || || | ||||| || || || Sbjct 133276 ATCAGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAAT 133335 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTG 72865 | ||||||| ||| ||||| | || || | || || || | ||| || |||| | Sbjct 133336 ACGTGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAG 133394 Query 72866 CTGCCAGAGTGTCCAATTCT 72885 | || | | | ||||||||| Sbjct 133395 CAGCTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 262 bits (290), Expect = 5e-65 Identities = 498/725 (69%), Gaps = 11/725 (2%) Strand=Plus/Minus Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 |||||||| | | ||| | ||| || | ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 41999 GCGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 42055 || |||||||| || || | | ||| ||| ||||||| | | ||||||||| Sbjct 280830 GCATCTGTTATTATT--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATCAAATGTTTA 280774 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||| || || || || ||||||| || ||||| | || | ||| || || Sbjct 280773 AACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAG 280714 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 280713 AATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCA 280654 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--AC 42233 |||||| || ||||| || || || || || || | | ||| ||| || || | Sbjct 280653 CTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAA 280594 Query 42234 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 || ||| |||||| | ||||||| || |||||||| || || | ||||| || || Sbjct 280593 TGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 280534 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||||||||| ||||| | ||| || ||| | | |||||| ||||| | | | Sbjct 280533 ATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAA 280474 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||||||||| || || | ||||| ||||| || ||||| || || || || | || Sbjct 280473 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 280414 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||||| | || || ||| |||||||||| ||||||| || || || || || || Sbjct 280413 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 280354 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTT 42531 || |||||||| ||||| |||||| ||||||| |||| ||| | |||| Sbjct 280353 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCG-CCGTCGCTTAACCG 280295 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 ||||||||| | || |||||||| | ||| || || || | |||||||| || ||||| Sbjct 280294 ATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTC 280235 Query 42592 TGCCT 42596 |||| Sbjct 280234 CGCCT 280230 >seq132 Length=759884 Score = 132 bits (146), Expect = 6e-26 Identities = 294/430 (68%), Gaps = 16/430 (4%) Strand=Plus/Plus Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCAT 72533 ||||| || |||||||||| || || || || | || || || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 ||||||||| || |||| || || || || ||| || ||||||||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 |||||||| || |||||| | ||||| ||| || || || |||||||| ||||||| Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 72654 GAGTTTATCCTTAT-ATTTGTT--AACTATATCCATGGTGATACTTGAAATAATCGGAGA 72710 || ||| || | | || ||| | | ||||| || | || |||| || || Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGT-AATGGTAATCC--GATATAACAGGGGA 236 Query 72711 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 72770 ||| ||||| | || | | | || || ||| ||||||||| |||| Sbjct 237 ATGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATAC 290 Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| |||||||| || || | |||||||| || || | ||||||| ||| ||||| || Sbjct 291 TTTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTC 350 Query 72831 TGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCG 72889 ||| || | || || || | ||| || |||| || || | | | ||||||||| || Sbjct 351 TGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCG 409 Query 72890 TTGTTACTCC 72899 | || || || Sbjct 410 TGGTGACGCC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120701725800