Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq234 122 1e-22 >seq234 Length=462357 Score = 122 bits (134), Expect = 1e-22 Identities = 467/725 (64%), Gaps = 30/725 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | ||||| |||||||| | || ||||| ||||| || || ||| || |||||| Sbjct 280230 AGGCGGAAGCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATT 280289 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| || | || || || | ||||| || || ||||||| || |||| Sbjct 280290 GGAA---TCGGTTAAGCGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTG 280346 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | |||||||| || || || || ||| | || |||||| || |||||| | | Sbjct 280347 CGGCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAA 280406 Query 125218 TTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | || | |||| ||||||| || || ||||| || || || |||||||||||| Sbjct 280407 TAACCGAAGC-TCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAA 280465 Query 125277 ATGTACTCTACACTGATTG--ACATGTA-CATTCGCGATCCGCAACGTAAACACATGCTC 125333 ||||| | ||| || | |||| || ||| || ||||| || | || Sbjct 280466 ATGTATAGTTTACTTATCGAAACATATATCATGGATGAAAAAGAACGTGAATA---TCTA 280522 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGG----TGATTCG 125389 ||||| || || || || |||| | | || ||||| |||||| | || | Sbjct 280523 TTTAATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGG 280582 Query 125390 GT-GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 | |||| || | | | || || || | | | || ||||| ||||| | Sbjct 280583 ATATCATCGCATTCGGCTAATTTTGGT-----GAGCGTGTAATAGCTTTCGCTGCCGTCG 280637 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 | || || |||||| || || || || | || |||||||| ||||| || ||| | | Sbjct 280638 AAGGTATATTCTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAA 280697 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568 |||| || | || | ||| || | ||||| || || || ||| | |||||||| | Sbjct 280698 TGCCAGGTTTAACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAAT 280757 Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 |||| | || ||||| || || || | | | | || | ||| | Sbjct 280758 TTGCGGTATTAATGTTT---AAACATTTGATAC------AAAAACCGAGTAAAGAACGGA 280808 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 | | | || |||| |||||||| | || ||| |||||||| | || || || ||| Sbjct 280809 TTTTGGAAATAATAACAGATGCCGTTAAAATTGAAAAAGAGTTTTTGACAGAGGCCTTAC 280868 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | ||| | | |||||||||||| || | |||||| | || ||||| | ||| || | Sbjct 280869 CAGTCGACTTAATTGGCATGAACAGCGAAAGTATGTGCAAATATATAGAATATGTTGCCG 280928 Query 125749 ATCGT 125753 ||||| Sbjct 280929 ATCGT 280933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038774555800