Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq15 132 3e-26 seq192 129 4e-25 seq19 118 8e-22 seq11 98.7 7e-16 >seq15 Length=3179940 Score = 132 bits (146), Expect = 3e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||||||||| || ||| || | | | ||||| |||||||||||| Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | |||||||||||||| || ||||| |||||||| || ||||||| ||| Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| |||| || || ||| | || || || || ||||| ||||| || || |||||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 15347 TTTACAAAAATTTGCATATTT 15367 || || ||||||||||| ||| Sbjct 2518879 TTAACGAAAATTTGCATTTTT 2518859 >seq192 Length=539225 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | || || | ||| | |||||| |||||||| || || |||||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGG-- 278371 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| || || ||| | ||||| ||||| |||||| || Sbjct 278370 ACAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTG 278311 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| |||||||| ||| ||| |||||| |||| || || || ||| | Sbjct 278310 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 278251 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 278250 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq19 Length=2240402 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || ||||| | || || || || || |||||||||||| Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| ||||| |||||||| | ||||||||||| || || ||| Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| || |||| || || ||| | || || Sbjct 933462 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACT 933403 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || || |||| ||||| ||||||||||||||| Sbjct 933402 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933355 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 || || || |||||||||||| | | | | ||||||| ||||| |||||||| | Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||| || || ||||| ||||| ||||| ||| ||| ||| || || Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || || ||| | || || |||||||| ||||| || || |||| ||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 15353 AAAATTTGCATA 15364 |||||||||||| Sbjct 931987 AAAATTTGCATA 931976 Score = 114 bits (126), Expect = 9e-21 Identities = 172/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || ||||| | || || || || || |||||||||||| Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| ||||| |||||||| | ||||||||||| || || ||| Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 931856 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 || ||||| || || |||||| ||| || ||| |||| || ||||| | || ||| | Sbjct 931855 ATACCTTCCTTATCTTGAATTTTAGCT-TTAACATTTTCGATAGTATC-CGATGGTTCAA 931798 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || || ||||| ||||| || || | ||||| ||||| |||||||| ||| ||||| Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTTTTAAAAT 931739 Score = 109 bits (120), Expect = 4e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| ||||| || || || ||||| || |||||||| ||| || | | | | Sbjct 939646 TAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATT 939587 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||| ||||||||||| | |||||||||||||| || ||| | ||||||||| || Sbjct 939586 TTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATC 939527 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| | || ||| | || || |||||| || || || ||||| || || Sbjct 939526 TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGT 939467 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 ||| || |||| || || || || | ||||| || ||||| Sbjct 939466 TTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTTAAAAAAT 939424 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || ||||| | || || || || || || ||||||||| Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| ||||| || || || | |||||||| || || || ||| Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| || |||| ||||| ||| | || || Sbjct 933690 ATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 933631 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| ||||| || || |||| ||||| ||||||||||||||| Sbjct 933630 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933583 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 || |||||||||||||| || | | | | | ||||| || ||||||||||| | Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 |||||||| || ||||| ||||| ||||| ||||| ||||| | || || || Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 15293 TCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351 || || ||||| | || ||| || || || || || ||||| || |||| |||||| || Sbjct 939732 TCGATAGTATC-CGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 15352 AAAAATTTGCAT 15363 ||| |||||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || |||||||||||||| || | | | | | ||| Sbjct 941635 AACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCT 941576 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC- 15270 || || ||||||||||| | |||||||| || ||||| ||||| ||||| ||||| Sbjct 941575 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCT 941516 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGG 15329 | ||||||| || || |||| || ||||| | || ||| || || || || || | Sbjct 941515 TGGATTTTTGCT-TTAACGTTTTCGATAGTATC-CGATGATTCCACCTCCAAAGTGATCG 941458 Query 15330 TTTTACCTGTCAGAGTTTT 15348 |||| || |||| |||||| Sbjct 941457 TTTTTCCGGTCAAAGTTTT 941439 >seq11 Length=3471450 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 91627 TTTGCGTTAATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGA 91686 |||| | || ||| || ||||| |||| || || ||| || | || || || || Sbjct 883851 TTTGACTCAACATTGCCCAAATCACCGATATGACGCTCATCATCAGTGGGTGCTCCATGC 883910 Query 91687 TCGTGTCCGGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCG 91746 || | | | ||||| |||||| |||| ||||| |||||||||||||| |||| ||| Sbjct 883911 TCTTTTTTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAACCGTTAGTGTTGTCCCCG 883970 Query 91747 AACTCGTGCACATGAAAACCGTGTAAACCCTT 91778 || ||||| ||||||||||| ||||| ||||| Sbjct 883971 AATTCGTGAACATGAAAACCATGTAATCCCTT 884002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169466999905