Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq15 138 7e-28 seq192 127 1e-24 seq19 127 1e-24 >seq15 Length=3179940 Score = 138 bits (152), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| |||||||||||||| |||||||| || || || || || || || || ||| Sbjct 2519071 ACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCC 2519012 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| || || |||||||| || || | || ||||||||||| || | Sbjct 2519011 AATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 2518952 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | ||| |||| ||| || ||| Sbjct 2518951 ATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 2518895 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || ||||||||||| |||||||||||||| ||||| Sbjct 2518894 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTAT 2518857 >seq192 Length=539225 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||||||| | ||| || || || |||||||| ||||| ||||| ||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || |||||||||||||| || || || ||||||||||| | || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| |||||| ||| || ||||| ||||| || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq19 Length=2240402 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| || || || |||||||| ||||| || || ||| ||| Sbjct 931957 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 931898 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || | Sbjct 931897 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 931838 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| || || || |||| ||| |||| ||| || ||||| Sbjct 931837 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 931778 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||||| || || |||||||| ||| Sbjct 931777 CCAGTTAATGTTTTCACAAAGATTTGCATTTTT 931745 Score = 122 bits (134), Expect = 6e-23 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| || || || |||||||| ||||| || || ||| ||| Sbjct 933564 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 933505 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || | Sbjct 933504 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 933445 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||| | || ||| ||| |||||| || | || || | || || || Sbjct 933444 ATCTTGGCCT---TGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 933388 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||||| || ||||||||||| Sbjct 933387 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 118 bits (130), Expect = 7e-22 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 933792 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 933733 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || ||| || ||||| ||||| || | ||| || ||||| || || | Sbjct 933732 AATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 933673 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | || || || || || || Sbjct 933672 ATTTTAGCC---TTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 933616 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||||| || ||||||||||| Sbjct 933615 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 33177 ACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAA 33236 |||| || || || |||||||| |||||| || || ||| ||||||||||| ||| || Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 33237 ATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTA 33293 | || ||||||||||| || | ||| || ||||| || || |||| |||| | | Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCT---TGA 932053 Query 33294 CTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTT 33353 | ||| ||| |||||| || | || || | || || || || || || | |||| Sbjct 932052 CGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTT 931993 Query 33354 TTACGAAAATTTGCAT 33369 | || ||||||||||| Sbjct 931992 TGACAAAAATTTGCAT 931977 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || |||||||| ||||| |||||||| || | Sbjct 941638 CGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCA 941579 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||| || || ||| ||| || ||||| |||||||| | || || ||||| || Sbjct 941578 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 941519 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || | || || |||| ||| Sbjct 941518 TCTTGGATTTTTGC---TTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTG 941462 Query 33332 ATCGTTTTTCCCGTAAGAGTTTT 33354 ||||||||||| || | |||||| Sbjct 941461 ATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33179 TCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAAT 33238 || |||||||| ||||| |||||||| || | || ||||| || || ||| ||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 33239 ATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT 33298 || ||||| |||||||| | || || ||||| || || || ||||||| ||| Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTT-TGTTTTAACGTT 939734 Query 33299 TGA-ATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTAC 33357 | || || || | || || |||| ||| ||||||||||| || | |||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 33358 GAAAATTTGCAT 33369 || |||||||| Sbjct 939673 AAATATTTGCAT 939662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769033350090