Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq19 105 5e-18 seq192 98.7 7e-16 seq15 98.7 7e-16 >seq19 Length=2240402 Score = 105 bits (116), Expect = 5e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| ||||| ||||| || ||||| ||||| || |||||||| |||| | |||| Sbjct 939822 CGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCT 939763 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 || || ||| |||||| ||| || | | | |||||| | | ||||| || | Sbjct 939762 TCCTTGTCTTGGATTTTTGTTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAA 939703 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| ||||| ||||| || |||||||||||||| Sbjct 939702 GTGATCGTTTTTCCGGTCAAAGTTTTGACAAATATTTGCAT 939662 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| ||||| ||||| ||||| || || ||| | | || ||| Sbjct 939646 TAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATT 939587 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || || ||||| || ||||| ||||| ||||| || || | || || ||||||||||| Sbjct 939586 TTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATC 939527 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | ||| |||||| | ||||| || || | || || || Sbjct 939526 TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGT 939467 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || || |||||||| || | ||||| Sbjct 939466 TTTCCCAGTCAATGTCTTCACGAAGACCTGCAT 939434 >seq192 Length=539225 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||| ||| | ||||| | ||||| ||| ||||||||||||||||||||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| |||||||| ||||| || || ||||| ||||||||||| | || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| || ||| || ||| || | | | ||| || | || || || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| || || ||||| || ||||| Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq15 Length=3179940 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||| || ||||| ||| ||| || |||| ||||||||||| || || || Sbjct 2519054 CTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAA 2518995 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| ||||| || || |||| | ||||||||||| |||||| ||||| | Sbjct 2518994 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 2518935 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | ||||| || || | ||||| ||||| || || | ||| || || Sbjct 2518934 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 2518875 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 2518874 GAAAATTTGCAT 2518863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768065906340