Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq15 102 7e-17 seq19 98.7 8e-16 >seq15 Length=3179940 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | ||| || || ||||||||||| || ||| | || ||||||| Sbjct 2519071 ACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCC 2519012 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| || |||| | | |||||||| || | ||||||||| || | Sbjct 2519011 AATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 2518952 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || ||| ||| || ||||| ||||| |||||| Sbjct 2518951 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 2518892 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCTTATAAATGACAAAA 20233 || || | ||||| || |||||||||||||||| | ||| | || | | |||| Sbjct 2518891 CCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTCTAAAAATTAAGAAAA 2518838 >seq19 Length=2240402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | ||| || || || || |||||||||||| || || |||||| Sbjct 931957 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 931898 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| ||||| ||| |||| | | || ||||| ||| | ||||| || || | Sbjct 931897 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 931838 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | | | || ||| ||||| ||||| ||||| |||||| Sbjct 931837 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 931778 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT-TTTTAAACTCT 20219 || || || ||||| ||||| |||||||| ||||||| ||| Sbjct 931777 CCAGTTAATGTTTTCACAAAGATTTGCATTTTTTAAAATCT 931737 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | ||| || || || || |||||||||||| || || |||||| Sbjct 933564 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 933505 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| ||||| ||| |||| | | || ||||| ||| | ||||| ||||| | Sbjct 933504 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 933445 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || || || | ||| || ||| ||| || ||| | ||| ||||| ||| Sbjct 933444 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTG 933385 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||||||||||||||| Sbjct 933384 CCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | ||| || || || || || ||||||||| || || |||||| Sbjct 933792 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 933733 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||| ||||| ||| | ||||| ||||| | Sbjct 933732 AATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 933673 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||| | ||| ||||| ||| Sbjct 933672 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTG 933613 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||||||||||||||| Sbjct 933612 CCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 20018 TCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAA 20077 || || || |||||||||||| || ||| ||||||||||| ||||| ||| || Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 20078 ATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGG 20137 || | | || ||||| ||| | ||||| ||||| ||| || || || | Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 20138 CCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACA 20197 ||| || ||| ||| || ||| | ||| ||||| ||||| ||||| ||||||||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 20198 AAAATTTGCAT 20208 ||||||||||| Sbjct 931987 AAAATTTGCAT 931977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419575924249605