Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq234 199 3e-46 >seq234 Length=462357 Score = 199 bits (220), Expect = 3e-46 Identities = 488/728 (67%), Gaps = 14/728 (2%) Strand=Plus/Minus Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || ||||||| || ||| | || |||||| | ||||| || | ||| || | | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || ||||| | || || | || ||||| ||||| | |||||| || | ||| Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATGCTTAA 13142 || || | | ||| || | | | |||||| || | | | |||| || | ||| |||| Sbjct 280830 GCATCTGTTATTATTTC-CAAAATCCGTTCTTTACTCG-GTTTTTGTATCAAATGTTTAA 280773 Query 13143 ACATCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 |||| | ||| ||||| ||||||||||| |||||||| | ||| | || || || Sbjct 280772 ACATTAATACC-GCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAG 280714 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||||| ||| ||||| | || ||||| || | ||||||||| | ||| || || Sbjct 280713 AATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCA 280654 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTAT 13319 ||| ||||| ||||| || || || || ||||| | | |||||| | || | | Sbjct 280653 CTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAA 280594 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | | |||||| | ||||| | || || | ||||| | ||| | | Sbjct 280593 TGCGA--TGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 280536 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | || || ||||||| ||| | ||| || || | ||||| || || || | || Sbjct 280535 CAATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTA 280476 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 | ||||||||||| || || | ||||||||| || ||||| ||||||||||| || | || Sbjct 280475 AACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAG 280416 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 | || | || ||||| || | |||||| ||| |||| || || ||||| || || | Sbjct 280415 CTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCAT 280356 Query 13560 CACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAA 13617 | || ||||||||||| || ||||| |||||| | |||| || || Sbjct 280355 CGGATGCCGCAAAAAAAGCCAAAACATGTG--AAATAAAATGCCGTTCGCCGTCGCTTAA 280298 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 | |||||| | ||||| || | ||| ||||||||| | ||||||||||| || Sbjct 280297 CCGATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGC 280238 Query 13678 AACAGCCT 13685 | |||| Sbjct 280237 TTCCGCCT 280230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970818021410