Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq192 165 2e-35 seq15 154 3e-32 seq19 140 7e-28 seq234 136 9e-27 seq69 84.2 5e-11 >seq192 Length=539225 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || |||||||| || |||||||| ||||||||||| || || | || | ||| ||||| Sbjct 278410 ACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 278351 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| ||||| || ||||| | | || || || || || ||||| ||||| |||||| Sbjct 278350 AATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 278291 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| |||||||||||||| | || || ||||| ||||| || || || ||||| Sbjct 278290 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 278231 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || ||||||||||| |||||||| |||| Sbjct 278230 CCCGTTAGGGTTTTTACAAAAATCTGCATATTGT 278197 >seq15 Length=3179940 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || ||||| || || || || || |||||||| |||| || | || ||| Sbjct 2519074 AGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCT 2519015 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||| ||||| | | |||||||| ||||| || |||||||||||| Sbjct 2519014 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 2518955 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || |||||||| | || ||| ||| || || || | |||||||| Sbjct 2518954 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 2518895 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||||||| ||||| || || || |||||||| Sbjct 2518894 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 2518860 >seq19 Length=2240402 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || || |||||||| || || || || | || | |||||| Sbjct 931960 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 931901 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||| | | || ||||| || || || ||||| ||||| Sbjct 931900 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCT 931841 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | ||||| ||||| || || | |||||||| Sbjct 931840 TGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTT 931781 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | |||||| ||||| || |||||||| Sbjct 931780 TTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || || ||||||||||| || || || | || | |||||| Sbjct 933795 AGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 933736 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || || |||||||| | | ||| ||||| || || || ||||| || ||| Sbjct 933735 TCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 933676 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || ||||| | ||| ||| ||| || || ||||| || || ||| Sbjct 933675 TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 933616 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| ||||| || ||||| Sbjct 933615 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || ||||| || || || | || | ||||| ||||| ||| Sbjct 939630 GTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCTAACTGTTTGCCA 939571 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| || || | |||||||||||| ||||| || | ||| Sbjct 939570 GCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTA 939511 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| | || ||||| || ||||| | ||| Sbjct 939510 ACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTC 939451 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || | ||||||||| Sbjct 939450 TTCACGAAGACCTGCATTTT 939431 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || || |||||||| || || || || | || | |||||| Sbjct 933567 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 933508 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||| | | || ||||| || || || ||||| || || Sbjct 933507 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 933448 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || ||||| | || ||| ||| || || |||| || || ||| Sbjct 933447 TGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 933388 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| ||||| || ||||| Sbjct 933387 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || || || || | ||| | |||||||| | ||| || ||||||||| Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || ||||| || || || ||||| || || |||||||| || || || ||| Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| ||| || || |||| || || ||||| ||||| | |||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 931987 AAAATTTGCAT 931977 >seq234 Length=462357 Score = 136 bits (150), Expect = 9e-27 Identities = 353/533 (66%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||| || || || ||||| ||| | ||| | |||| Sbjct 280230 AGGCGGAAGCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATT 280289 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| |||| | ||| | ||||| || || || | || |||||||| | Sbjct 280290 GGAATCGGTTAAGCGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 280349 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 |||||||| ||||| || ||| |||| || || | |||||||| || || Sbjct 280350 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 280409 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | || ||||| || || || || || || |||||| | || || || |||| Sbjct 280410 CCGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 280469 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 | ||| || | || || || ||||| ||| | || ||| || |||||| | Sbjct 280470 ATAGTTTACTTATCGAAACATATATCATGGATGAAAAAGAACGTGAATATCTATTTAATG 280529 Query 269052 CTA-TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA--A 269108 | | |||| || ||| | || | || || | ||||||||||| |||||| | Sbjct 280530 CCATTGAG-ACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGATATCA 280588 Query 269109 ACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 || || || || || || | || | ||||| || || || |||||||||||| Sbjct 280589 TCGCATTCGGCTAATTTTGGTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATTC 280648 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 ||| || || || | || |||||| | |||||| | || | |||||||| ||| Sbjct 280649 TTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 280708 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || |||||||| ||| ||||| | || ||||| || ||||| || || || Sbjct 280709 ACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGC 280761 >seq69 Length=1091995 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || ||||||| || || | ||| |||||||| || || || ||| |||| Sbjct 837459 TTTTGTATGTTATAGTGCATTAACGTGCAACCATCTTCTAGCTGCTTGCCGGCATAAATC 837400 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||| || || || || || ||||||||||||| ||||| | || || Sbjct 837399 AATCGGCGTTGATTTGGTGGGATGCCGTCCTTATCCTGAATCTCCGCTTTAATCTTCTCA 837340 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| | ||||| | |||| || | || || || || | ||||| || || Sbjct 837339 ATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTATTGCCCGTTAACGTTTTCACGAAA 837280 Query 104552 ATCTGCATTTT 104562 ||||||||||| Sbjct 837279 ATCTGCATTTT 837269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151365871196140