Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq192 165 2e-35
seq15 154 3e-32
seq19 140 7e-28
seq234 136 9e-27
seq69 84.2 5e-11
>seq192
Length=539225
Score = 165 bits (182), Expect = 2e-35
Identities = 165/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| |||||||| || |||||||| ||||||||||| || || | || | ||| |||||
Sbjct 278410 ACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 278351
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| ||| ||||| || ||||| | | || || || || || ||||| ||||| ||||||
Sbjct 278350 AATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 278291
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| |||||||||||||| | || || ||||| ||||| || || || |||||
Sbjct 278290 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 278231
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564
|| || || ||||||||||| |||||||| ||||
Sbjct 278230 CCCGTTAGGGTTTTTACAAAAATCTGCATATTGT 278197
>seq15
Length=3179940
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||| | || ||||| || || || || || |||||||| |||| || | || |||
Sbjct 2519074 AGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCT 2519015
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | |||||| ||||| ||||| | | |||||||| ||||| || ||||||||||||
Sbjct 2519014 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 2518955
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || || || |||||||| | || ||| ||| || || || | ||||||||
Sbjct 2518954 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 2518895
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| |||||||| ||||| || || || ||||||||
Sbjct 2518894 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 2518860
>seq19
Length=2240402
Score = 140 bits (154), Expect = 7e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| ||||| || || |||||||| || || || || | || | ||||||
Sbjct 931960 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 931901
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||| || ||||||||||| | | || ||||| || || || ||||| |||||
Sbjct 931900 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCT 931841
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| |||||||| | ||||| ||||| || || | ||||||||
Sbjct 931840 TGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTT 931781
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| | |||||| ||||| || ||||||||
Sbjct 931780 TTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| ||||| || || ||||||||||| || || || | || | ||||||
Sbjct 933795 AGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 933736
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||| || || |||||||| | | ||| ||||| || || || ||||| || |||
Sbjct 933735 TCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 933676
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || || || || ||||| | ||| ||| ||| || || ||||| || || |||
Sbjct 933675 TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 933616
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | |||||| ||||| || |||||
Sbjct 933615 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||||||||| || ||||| || || || | || | ||||| ||||| |||
Sbjct 939630 GTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCTAACTGTTTGCCA 939571
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | |||||||| || || | |||||||||||| ||||| || | |||
Sbjct 939570 GCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTA 939511
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| | || ||||| || ||||| | |||
Sbjct 939510 ACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTC 939451
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || | |||||||||
Sbjct 939450 TTCACGAAGACCTGCATTTT 939431
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| ||||| || || |||||||| || || || || | || | ||||||
Sbjct 933567 AGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCT 933508
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||| || ||||||||||| | | || ||||| || || || ||||| || ||
Sbjct 933507 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 933448
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| || || || ||||| | || ||| ||| || || |||| || || |||
Sbjct 933447 TGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 933388
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | |||||| ||||| || |||||
Sbjct 933387 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || || || || | ||| | |||||||| | ||| || |||||||||
Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | || ||||| || || || ||||| || || |||||||| || || || |||
Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || ||| ||| || || |||| || || ||||| ||||| | |||||| |||
Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988
Query 104549 AATATCTGCAT 104559
|| || |||||
Sbjct 931987 AAAATTTGCAT 931977
>seq234
Length=462357
Score = 136 bits (150), Expect = 9e-27
Identities = 353/533 (66%), Gaps = 5/533 (1%)
Strand=Plus/Plus
Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811
|||| | || ||||||||||||| || || || ||||| ||| | ||| | ||||
Sbjct 280230 AGGCGGAAGCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATT 280289
Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871
|||| |||| | ||| | ||||| || || || | || |||||||| |
Sbjct 280290 GGAATCGGTTAAGCGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 280349
Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931
|||||||| ||||| || ||| |||| || || | |||||||| || ||
Sbjct 280350 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 280409
Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991
| ||||| | || ||||| || || || || || || |||||| | || || || ||||
Sbjct 280410 CCGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 280469
Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051
| ||| || | || || || ||||| ||| | || ||| || |||||| |
Sbjct 280470 ATAGTTTACTTATCGAAACATATATCATGGATGAAAAAGAACGTGAATATCTATTTAATG 280529
Query 269052 CTA-TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA--A 269108
| | |||| || ||| | || | || || | ||||||||||| |||||| |
Sbjct 280530 CCATTGAG-ACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGATATCA 280588
Query 269109 ACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167
|| || || || || || | || | ||||| || || || ||||||||||||
Sbjct 280589 TCGCATTCGGCTAATTTTGGTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATTC 280648
Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227
||| || || || | || |||||| | |||||| | || | |||||||| |||
Sbjct 280649 TTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 280708
Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280
|| |||||||| ||| ||||| | || ||||| || ||||| || || ||
Sbjct 280709 ACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGC 280761
>seq69
Length=1091995
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|| || || ||||||| || || | ||| |||||||| || || || ||| ||||
Sbjct 837459 TTTTGTATGTTATAGTGCATTAACGTGCAACCATCTTCTAGCTGCTTGCCGGCATAAATC 837400
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491
| | |||||| || || || || || ||||||||||||| ||||| | || ||
Sbjct 837399 AATCGGCGTTGATTTGGTGGGATGCCGTCCTTATCCTGAATCTCCGCTTTAATCTTCTCA 837340
Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551
| |||||| | ||||| | |||| || | || || || || | ||||| || ||
Sbjct 837339 ATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTATTGCCCGTTAACGTTTTCACGAAA 837280
Query 104552 ATCTGCATTTT 104562
|||||||||||
Sbjct 837279 ATCTGCATTTT 837269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151365871196140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |