Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq135 208 5e-49 >seq135 Length=742707 Score = 208 bits (230), Expect = 5e-49 Identities = 481/723 (67%), Gaps = 4/723 (1%) Strand=Plus/Plus Query 71909 GTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAA 71968 ||| ||||| || ||| | ||||| || || || |||||||| || || ||||| || || Sbjct 463546 GTCAGATCTAATTATTATTGCCGCTCGACCTTCAATGGGGAAAACGACTTTTGCTATTAA 463605 Query 71969 TCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGAT 72028 | | ||| |||| || | | | ||||| ||||| || ||||||| || || || Sbjct 463606 TTTATGTGAATATGCTGCCATAAATGAAGATAAACCCGTTTTAATTTTTAGTCTAGAAAT 463665 Query 72029 GCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCG 72088 | | ||| | ||| | |||||||| ||| | ||| | | | || ||||| | || Sbjct 463666 GTCAAGCGAACAGATTATGATGCGTATACTTTCATCTTTATCGAGAGTAGATCAAAGTCA 463725 Query 72089 TATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTAT 72148 | | || || ||| | || | || |||||| | || | || || || | || Sbjct 463726 ATTAAGAACTGGTCAATTAAAAAAAGAAGATTGGTCTCGTATATCGAATACAGTGCGAAT 463785 Query 72149 TCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCT 72208 || | | || |||| |||| ||| ||||| || |||| ||||| | Sbjct 463786 ATTGCTAAAAAAAAAGAACATTTATATCGATGATTCTTCTAAATTGACAGTAACAGAAAT 463845 Query 72209 ACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGA 72268 || ||| | | | ||| ||| | ||| ||| || || || | ||||||||||| Sbjct 463846 TCGCTCCAGATCAAGACGTATTTTTCGTGAACATGCAGGATTAAGTTTAATTATGATCGA 463905 Query 72269 CTACCTGCAACTTATGCGCGTCCC--CGAGCTGCAAGATAACCGAACGCTGGAAATTGCC 72326 ||| |||||||||||| | || | | | || ||| || | | |||||||| Sbjct 463906 TTACTTGCAACTTATGCATGCTCCTACAATATTTAA--TAATAGAGCATTAGAAATTGCA 463963 Query 72327 GAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTG 72386 || ||||| | || | || || | || || ||| | ||||| || || | || || Sbjct 463964 GAAATTTCAAGATCTTTAAAATCGCTAGCTAAAGAACTTCAAGTTCCTGTAATCGCGTTA 464023 Query 72387 TCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTA 72446 ||||||||||||||| | ||||| || | || ||| | ||| | |||||||||||| Sbjct 464024 TCACAACTTAATCGAAGTTTAGAACAACGATCTGATAAAAGGCCGATCAATTCAGATTTA 464083 Query 72447 CGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAA 72506 | ||||| ||| | || |||||||| ||||| | ||||||||| | ||||| || ||| Sbjct 464084 AGAGAATCTGGATCTATCGAGCAGGATGCAGATGTAATTATGTTTATTTATCGAGATGAA 464143 Query 72507 GTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGA 72566 || ||| || ||| || | || || || || || | ||| | ||||| ||||| Sbjct 464144 GTGTATAACGAAAATAATGACACAAAAGGAATAGCGGAAATTATTTTAGGAAAACAACGT 464203 Query 72567 AATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAAC 72626 |||||||| || || || | ||||| |||||| || ||| || | || |||||| Sbjct 464204 AATGGCCCGATAGGAACAATTCGATTGATTTTTAATGGAAAATTATCTAGATTCGATAAC 464263 Query 72627 TAT 72629 ||| Sbjct 464264 TAT 464266 Score = 95.1 bits (104), Expect = 7e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 21171 TGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTG 21230 ||||| || || | || || || |||||| |||| |||||||| | ||| ||||| Sbjct 464501 TGGCGTGATAAAAATACCGGAGAAATGAAAGAAAAAACTGAATGGCACAGAGTAGTTTTT 464560 Query 21231 TTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATC 21290 || ||||||||||||||||| || | || |||||| |||||||||||| || || || Sbjct 464561 TTTGGAAAACTTGCTGAAATAGCAGGAGAATATTTAAAAAAAGGTTCTCAAGTGTATGTC 464620 Query 21291 GAAGG 21295 ||||| Sbjct 464621 GAAGG 464625 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||| ||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 423747 GGCCCTTTAGCTCAGAGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 423688 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 423687 CCAGCAAGGGCCA 423675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303227051027805