Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq42 131 2e-25 seq1 114 2e-20 seq47 84.2 3e-11 >seq42 Length=1371130 Score = 131 bits (144), Expect = 2e-25 Identities = 218/312 (70%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| ||||||| | || || | ||| |||||| | ||||||| Sbjct 632393 ATTGGGATTTTGGCAAAATGGGTATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCC 632334 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || |||||||| ||| ||||| |||| | | || | | || || || | Sbjct 632333 GGCGTGCTTTTGCTTCAAGAGTCTTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAGC 632274 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| ||||| || |||||||||||||| ||||||||| || |||||||| Sbjct 632273 ATGTCAAAGGTATTTTGTTGTATGGACCTCCTGGTACCGGTAAAACCTTGATGGCTCGCC 632214 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | || || ||| || || |||||||| ||||| ||| | ||| Sbjct 632213 AAATAG-GCAATATGTTGAATGCTCGTGAGCC--AAAAATTGTAAATGGCCCTCAGGTAT 632157 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | |||||||| || ||||| ||||||||| | ||| | |||| || ||||| | Sbjct 632156 TAGATAAATATGTTGGCGAGTCCGAAGCTAATATAAGACGGCTGTTCGCCGAAGCTGAGG 632097 Query 164690 AAGAACAAAAGA 164701 |||| |||||| Sbjct 632096 AAGAGGAAAAGA 632085 Score = 113 bits (124), Expect = 5e-20 Identities = 218/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 164785 CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAAT 164844 ||||| | || |||||||| ||| | ||||||| || || || || || |||||| Sbjct 631928 CATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTGAATAAT 631869 Query 164845 ATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCT 164904 |||||| || | |||||||| || || | ||| | |||||||| |||||| |||| || Sbjct 631868 ATTTTAGTTATTGGTATGACAAATCGCCGTGACATGATTGATGAGGCTTTACTACGTCCC 631809 Query 164905 GGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATT 164964 || || || ||| || |||| ||||| | || || || ||| ||| | | |||||| Sbjct 631808 GGCCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTACAAATT 631749 Query 164965 TTAAAAGTTCATGTGGCTAAAATGAAATCCTG----TGATATATTATCTCCCGATGTAGA 165020 |||| |||| | ||| | | | || | ||| | | || ||||| || Sbjct 631748 CTAAATATTCACACG----AAACGTATGCGTGATTTTAATAAAATTGCTGGAGATGTGGA 631693 Query 165021 TTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGT 165080 | || |||| |||||| || || |||| || || || ||||| || || ||||| Sbjct 631692 TACGAAAGAAATCGCTGCCCTTACCAAGAATTTCAGCGGCGCCGAATTGGAAGGCTTAGT 631633 Query 165081 AAGAGCCGCTCAATCAACCGC 165101 | | || || ||||| || || Sbjct 631632 ACGTGCTGCCCAATCTACTGC 631612 >seq1 Length=5869143 Score = 114 bits (126), Expect = 2e-20 Identities = 307/465 (66%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||||| | | || ||||| | |||||| || | ||| || Sbjct 1470715 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1470656 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | || || ||||| | | | ||||||||| Sbjct 1470655 GTGTGGACAAAATCGCCTGGTTTAAGGCCAGTTAAATGTGCAATCATACACGTTAATAAT 1470596 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | |||||||| || | |||||| | Sbjct 1470595 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1470536 Query 6982 TGACAAGATA---AAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 || || || | | ||||| ||| |||| || || ||| ||| || || ||| Sbjct 1470535 TGGCATGACAGCTCATTATTGGCTA---CATAGAACTGGGCCAAGCAATGGCAGGGTGGT 1470479 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||||||||||| | || | ||||||| ||| | Sbjct 1470478 AAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTA 1470419 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG---TAATTGATCTATACCCTGACCTT-- 7153 |||||| | ||| |||| |||||| || |||||||| | |||| || | Sbjct 1470418 GGATTTATAGTTA---TTGTCTCAATTATCTGCTTCAATTGATCGACTCCCT--CCGTAC 1470364 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||||| | ||| | || |||||||| | ||||||||| || |||| Sbjct 1470363 CATAACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 1470304 Query 7214 TAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGAT 7258 | || || | || |||||||| |||| | | || || ||| || Sbjct 1470303 TTGGCCCCAGGTCGCCTTCTTCGCGATCACTGAACCCGCATCTAT 1470259 Score = 109 bits (120), Expect = 7e-19 Identities = 295/447 (66%), Gaps = 16/447 (4%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||||| | | || ||||| | |||||| || | ||| || Sbjct 1455945 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1455886 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | | || ||||| | | | ||||||||| Sbjct 1455885 GTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATACACGTTAATAAT 1455826 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | |||||||| || | |||||| | Sbjct 1455825 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1455766 Query 6982 TGACAAGATA---AAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 || || || | | ||||| ||| |||| || || ||| ||| || || ||| Sbjct 1455765 TGGCATGACAGCTCATTATTGGCTA---CATAGAACTGGGCCAAGCAATGGCAGGGTGGT 1455709 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||||||||||| | || | ||||||| ||| | Sbjct 1455708 AAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTA 1455649 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG---TAATTGATCTATACCCTGACCTT-- 7153 |||||| | ||| |||| |||||| || |||||||| | |||| || | Sbjct 1455648 GGATTTATAGTTA---TTGTCTCAATTATCTGCTTCAATTGATCGACTCCCT--CCGTAC 1455594 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||||| | ||| | || |||||||| | ||||||||| || |||| Sbjct 1455593 CATAACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 1455534 Query 7214 TAGGACCTAAATCACCTTCTTCACGAT 7240 | || || | || |||||||| |||| Sbjct 1455533 TTGGCCCCAGGTCGCCTTCTTCGCGAT 1455507 Score = 109 bits (120), Expect = 7e-19 Identities = 295/447 (66%), Gaps = 16/447 (4%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||||| | | || ||||| | |||||| || | ||| || Sbjct 1460483 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1460424 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | | || ||||| | | | ||||||||| Sbjct 1460423 GTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATACACGTTAATAAT 1460364 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | |||||||| || | |||||| | Sbjct 1460363 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1460304 Query 6982 TGACAAGATA---AAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 || || || | | ||||| ||| |||| || || ||| ||| || || ||| Sbjct 1460303 TGGCATGACAGCTCATTATTGGCTA---CATAGAACTGGGCCAAGCAATGGCAGGGTGGT 1460247 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||||||||||| | || | ||||||| ||| | Sbjct 1460246 AAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTA 1460187 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG---TAATTGATCTATACCCTGACCTT-- 7153 |||||| | ||| |||| |||||| || |||||||| | |||| || | Sbjct 1460186 GGATTTATAGTTA---TTGTCTCAATTATCTGCTTCAATTGATCGACTCCCT--CCGTAC 1460132 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||||| | ||| | || |||||||| | ||||||||| || |||| Sbjct 1460131 CATAACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 1460072 Query 7214 TAGGACCTAAATCACCTTCTTCACGAT 7240 | || || | || |||||||| |||| Sbjct 1460071 TTGGCCCCAGGTCGCCTTCTTCGCGAT 1460045 >seq47 Length=1283721 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| | || |||||||||||||| || || |||||| || ||||||||||| Sbjct 1006140 ATACCACAGATTGGTGATAAGTTTGCGTCACGGCATGGTCAAAAGGGTACATGTGGTATC 1006081 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||||||||| |||||||| || || || ||| | |||||| |||| ||| Sbjct 1006080 CAATATCGTCAAGAGGATATGCCGTTCACGTGTGAAGGTCTTTCTCCGGATATTATAATT 1006021 Query 19475 AACCCACATGC 19485 || |||||||| Sbjct 1006020 AATCCACATGC 1006010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595855576278000