Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq152 114 7e-21 seq304 109 3e-19 seq8 109 3e-19 seq153 104 1e-17 seq88 100 1e-16 >seq152 Length=621750 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | || ||||||||| |||||||||| ||||||||||||||||||| Sbjct 451956 AATGAAAAATAATATGCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 452015 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 452016 ACGACGCTCTAACCAACTGAGCTAATGGGCC 452046 >seq304 Length=370928 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 335815 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 335874 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 335875 TGAGCTAATGGGCC 335888 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 339152 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 339211 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 339212 TGAGCTAATGGGCC 339225 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 343447 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 343506 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 343507 TGAGCTAATGGGCC 343520 >seq8 Length=3710877 Score = 109 bits (120), Expect = 3e-19 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3575770 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3575829 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 |||||||||||||| | |||| Sbjct 3575830 TGAGCTAATGGGCCCTACACGA 3575851 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3579012 AAGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 3579071 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 3579072 AACTGAGCTAATGGGCC 3579088 >seq153 Length=634056 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 220507 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 220566 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 220567 TGAGCTAATAGGCCGT 220582 >seq88 Length=978718 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 268448 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 268389 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 268388 TGAGCTAATAGGCC 268375 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484172832580