Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19 122 8e-23 seq15 120 3e-22 seq264 86.0 6e-12 >seq19 Length=2240402 Score = 122 bits (134), Expect = 8e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||||||||||||| | ||| || || || ||| | Sbjct 941638 CGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCA 941579 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||| || ||||||| || | ||||| ||||||||||||||||| ||| Sbjct 941578 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 941519 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||| || ||| ||| ||| || | || || || | ||||| Sbjct 941518 TCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATC 941459 Query 94973 GTTTTTCCAGTAAGAGTTTT 94992 |||||||| || | |||||| Sbjct 941458 GTTTTTCCGGTCAAAGTTTT 941439 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || || | ||||| ||||| || || ||||| || | Sbjct 933595 AAAAATTTGCATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAAT 933536 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| || ||| || |||| || || || |||| || || | ||| Sbjct 933535 GTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTG 933476 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||||||||| ||||| | ||| || ||||||||| | | |||||| Sbjct 933475 CTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTC 933416 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | |||||||| || ||||| | ||||| ||||| || ||||| Sbjct 933415 GGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | || |||||| || ||| || ||| Sbjct 933792 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 933733 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || ||| |||| || || | ||||||||||| ||||||||||| ||||| | | Sbjct 933732 AATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 933673 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| | | ||||| | | ||||| || | |||||||| || Sbjct 933672 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTG 933613 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| ||||| || ||||| Sbjct 933612 CCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| |||||| || |||| || |||| || || || |||| Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || || | |||||||||||| ||||||||||| ||||| | ||| || ||||||||| Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | |||||| | | ||||| || | |||||||| || ||||| | ||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 94997 AAGATCTGCAT 95007 || || ||||| Sbjct 931987 AAAATTTGCAT 931977 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || || | ||||| ||||| || || ||||| || | Sbjct 931988 AAAAATTTGCATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAAT 931929 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| || ||| || |||| || || || |||| || || | ||| Sbjct 931928 GTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTG 931869 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||||||||| || || | |||||| || || || ||| ||| || Sbjct 931868 CTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATC 931809 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || ||||| ||||| | |||||||||||||| ||||| Sbjct 931808 CGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||| || | ||||| ||||||||||||||||| || Sbjct 939817 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 939758 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||||| || ||| ||| ||| || | || || || | ||||| Sbjct 939757 GTCTTGGATTTTTGTTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGAT 939698 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | |||||| ||||| || ||||| Sbjct 939697 CGTTTTTCCGGTCAAAGTTTTGACAAATATTTGCAT 939662 >seq15 Length=3179940 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || |||||||| | |||||| ||| | ||| ||| ||| Sbjct 2519071 ACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCC 2519012 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | || || || | ||| |||||||||||||| |||||||| || | | Sbjct 2519011 AATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 2518952 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | || || ||||| Sbjct 2518951 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 2518892 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| || || || ||||| Sbjct 2518891 CCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 >seq264 Length=376872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/220 (69%), Gaps = 9/220 (4%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || ||||| || | ||| |||||||||| ||||| || || ||| | | Sbjct 176039 CGTAATACCAAATGGAGCGTAAATTCCTTTTGGGTATTATAGTCTGACAAGGTGCGGCTA 175980 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| | || ||| |||| || || | || ||||||||||||||| |||| | Sbjct 175979 TCTTCCAGATACTTACCGACAAAAATGAAGCGCTGTTGATCTGGAGGAATA---TCTTCG 175923 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||| || || | | | | || | ||| || || || | |||||| Sbjct 175922 TCGTGAATTTTTGCTTTACCGTTTTCAAGAATATCCGAGTGTTCTACTTCTAAAGTGATG 175863 Query 94973 GTTTTTCCAGT---AAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||| | |||||| ||||||||||| |||| Sbjct 175862 GTTT---CAGTTGCCAAAGTTTTTACAAAGATCTGAATGC 175826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278843973800