Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq146 120 6e-23 seq129 120 6e-23 seq617 118 2e-22 seq1393 114 3e-21 seq490 114 3e-21 seq491 111 3e-20 seq468 100 6e-17 seq138 89.7 1e-13 >seq146 Length=649395 Score = 120 bits (132), Expect = 6e-23 Identities = 287/430 (67%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| | |||||||||| ||||||||||||||| || | || | | Sbjct 537730 ACATGATCATTGAATATATGCTTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 537671 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 537670 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 537611 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || |||| ||||||||| || || | || || ||||| ||| Sbjct 537610 CAATCAATGTGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTGTCA 537551 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || |||||||| | || | || || || ||| | |||| || Sbjct 537550 CATATTACATCATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATACGCTT-ATA 537494 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | ||| ||| | ||||||| Sbjct 537493 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGTTCGATCAGTGTC 537434 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | | | || | || | || || || | ||| Sbjct 537433 TGCAGATAACGATATTTTGGTTGATATAAACATTTCAAATATATGTAGATGTTTTTAAAA 537374 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | | || ||| | | | ||| | || | |||| ||||| ||||| ||||| Sbjct 537373 CTGAGCCTATTAGGACTTTCTGTTAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 537314 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 537313 GGTCCCACAA 537304 >seq129 Length=715974 Score = 120 bits (132), Expect = 6e-23 Identities = 287/430 (67%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| ||| ||||||||||||||| || | || | | Sbjct 439747 ACATGATCATTGTATATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 439806 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 439807 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 439866 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | ||| |||| ||||| || || || | | || || |||||| ||| Sbjct 439867 CAATCAATGTGCTTATGTCTCCCCATACAAAAGTAATTTCTTATAGTATTCTGTTTGTCA 439926 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || |||||||| | || | || || || ||| | ||| || Sbjct 439927 CATATTACATCATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATACACTT-ATC 439983 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || | ||||| | ||| | | | |||| Sbjct 439984 ACTTTTTCATTTTCTGAGAATGTAAATAAGTCTATACCCTTTATCGGATCGATTAGTGCT 440043 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| || || || | || || || | ||| Sbjct 440044 TGCAGATAACGATATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTTTTTAAAA 440103 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | ||| || || | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 440104 CTGAGACCATTAGGGCTTTCTATTAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 440163 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 440164 GGTCCCACAA 440173 >seq617 Length=99254 Score = 118 bits (130), Expect = 2e-22 Identities = 288/432 (67%), Gaps = 7/432 (2%) Strand=Plus/Plus Query 7283 TGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAA 7342 |||||| ||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 15722 TGACATCATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCA 15781 Query 7343 AGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGA 7402 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| | Sbjct 15782 TATTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAA 15841 Query 7403 AGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTT 7462 ||| |||| | ||| |||| ||||| || || || | | || || ||||| | Sbjct 15842 AGCAATCAATGTGCTTATGTCTCCCCATACAAAAGTAATTTCTTATAGTATTTTGTTTGT 15901 Query 7463 CACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGA 7519 | || ||||| || | |||||| | || | || || || ||| | ||| | Sbjct 15902 CGCATATTACATCATCGACTATCATTATTGAATGTGGTTTTGC--CTTAGATACACTT-A 15958 Query 7520 TTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTG 7579 | || ||||| ||| |||||| || || ||||| | ||| | | | ||||| Sbjct 15959 TAACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGATCGATCAGTG 16018 Query 7580 TCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAA 7639 ||| ||| || |||| |||||||| | | ||| || || || | || || || || Sbjct 16019 TCTGCAGATACCGATATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTTTGTAA 16078 Query 7640 ACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTG 7699 | || | ||| || || | | || ||| | || | |||| ||||| ||||| |||| Sbjct 16079 AACTGAGACCATTAGGGCTTTCTATTAGACTGATCATAACATTTGTCTTGCCACAATTTG 16138 Query 7700 ATGG-CCCGCAA 7710 | || ||| ||| Sbjct 16139 ACGGTCCCACAA 16150 >seq1393 Length=96623 Score = 114 bits (126), Expect = 3e-21 Identities = 286/430 (67%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 90538 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 90597 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | | ||||| |||| ||||| || ||||| | ||| ||| Sbjct 90598 TTTGCATTATCACGTATTATATATTTGGGAATTCTCGTATACGTATGACATAAATAAAAG 90657 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || |||| |||||||| || || | || || ||||| || Sbjct 90658 CAATCAATGTGTTTATGTCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTGTCG 90717 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || | ||| || |||||||| | || | || || || ||| |||||| || Sbjct 90718 CATATTAAATCATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATAGGCTT-ATA 90774 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | ||| ||| | ||||||| Sbjct 90775 ACTTTTTCATTTTCTGGGAATGTAAATAAGTTTATACCCTTTATCGGTTCGATCAGTGTC 90834 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| || || || | || || || | ||| Sbjct 90835 TGCAGATAACGATATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTTTTTAAAA 90894 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | || || ||| | | || ||| | || | |||| ||||| ||||| ||| | Sbjct 90895 CTGAGCCCATTAGGACTTTCTATTAGACTAATCATAACATTTGTCTTGCCACAATTTCAC 90954 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 90955 GGTCCCACAA 90964 >seq490 Length=169246 Score = 114 bits (126), Expect = 3e-21 Identities = 288/431 (67%), Gaps = 9/431 (2%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| |||||||| ||| ||||||||||||||| || | || | | Sbjct 26210 ACATGATCATTGTAAATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 26151 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 26150 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 26091 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | ||| |||| |||||| || || || | | || || ||||| || Sbjct 26090 CAATCAATGTGCTTATGTCTACCCATACAAAAGTAAATTCTTATAGTATTTTGTTTGTCG 26031 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || | ||||| || |||||||| | || | || || || ||| | ||| || Sbjct 26030 CATACTACATCATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATACACTT-ATA 25974 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || |||| | ||| | | | |||| Sbjct 25973 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTGTACCCTTTATCGGATCGATTAGTGCT 25914 Query 7582 TCCAG-GAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAA 7640 | ||| |||| ||| |||| ||| | | ||| || || | | ||| || || | ||| Sbjct 25913 TGCAGATAACT-ATATTTTGCTTGATATAAAGATTTCGAATTTATATAGATGTTTTTAAA 25855 Query 7641 CCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA 7700 |||| ||| || || | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 25854 ACTCAGACCATTAGGGCTTTCTATTAGACTAATCATAACATTTGTCTTGCCACAATTTGA 25795 Query 7701 TGG-CCCGCAA 7710 || ||| ||| Sbjct 25794 CGGTCCCACAA 25784 >seq491 Length=173234 Score = 111 bits (122), Expect = 3e-20 Identities = 285/430 (66%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 168806 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 168865 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 168866 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 168925 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || |||| |||||||| || || | || || ||||| || Sbjct 168926 CAATCAATGTGTTTATGTCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTGTCG 168985 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || | ||| || |||||||| | || | || || || ||| |||||| || Sbjct 168986 CATATTAAATCATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATAGGCTT-ATA 169042 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | ||| | | | | ||| | Sbjct 169043 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGATCGATCGGTGCC 169102 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | | || |||||||| | | ||| || || || | || || || | ||| Sbjct 169103 TGCAGATAACGGTATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTTTTTAAAA 169162 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | ||| || || | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 169163 CTGAGACCATTAGGGCTTTCTATTAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 169222 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 169223 GGTCCCACAA 169232 >seq468 Length=191081 Score = 100 bits (110), Expect = 6e-17 Identities = 331/511 (65%), Gaps = 9/511 (2%) Strand=Plus/Plus Query 5221 TCATTTTGATGGTACTGTGTATGGTGCTGTTGTAAGTATTCACCAAGTCATCAAGTGTAT 5280 ||||||| || || || || | ||| | ||||| ||| | | ||| | | | ||| Sbjct 64278 TCATTTTTATCGTTCTATGAAATGTGTTATTGTATTTATCGATAAGGTCCTTATATATAT 64337 Query 5281 CGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT-TTCGTCTTAAGTGTT 5339 ||| |||||| | || || |||||||| |||||| ||| | |||| ||| Sbjct 64338 GAATCCATTTGTAGGTTCCTTGAAAACTAAACTCTTTCCACATCATTCCTTTTAA-TGTC 64396 Query 5340 CTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGATTTATC 5399 ||||| |||||||| |||||| || || ||| ||| |||||||||| |||| || Sbjct 64397 CTATTAAAACGTTCTACTATGGACGCCTTCAGAACGCTATATGTTGAATAGTGATTAATA 64456 Query 5400 TTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGATCAACA 5459 | | | | ||||| | | |||| | ||| ||||||||||||| | |||| Sbjct 64457 TGATTGTTTTGCATCAATTGATGAAATTGACTATTGAAAAACTCTTTACCATCATCAGTT 64516 Query 5460 TGGAGATTCTTAGGGATACGA-----CCTTGCTGAAGTACAGACTTCATAGCACTTGTGA 5514 || | ||| || || | ||| || | |||| | |||||||||| | || | Sbjct 64517 TGCAAATTTTTCGGTTTGCGATGGCTTTTTTCAAAAGTTC--CCTTCATAGCATTCGTTA 64574 Query 5515 CATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATATCTA 5574 | | | |||| |||| || | | | ||||| || | ||| |||||| |||||| Sbjct 64575 CGTTTTGACCAGTTTTGTTTTTCACCGCCATAGCCCAAGCCTTTTTCGAAAATGTATCTA 64634 Query 5575 TGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCAACCA 5634 | | ||| | ||||| || || ||||| | |||||| ||||| ||||| | Sbjct 64635 TTACTGTTAAAAGATAACGATAACCGTTATTTTGCGCTGCATAGCTTATCATTTCAACGA 64694 Query 5635 AGTCAGCTTGCCAAGTCTCATCGAGACCTCGGATATCAACATGACGACGTTTATAGTTTC 5694 ||| |||||||| ||||| | ||| || |||| | | | ||| | | | Sbjct 64695 GGTCTGCTTGCCACAAATCATCAATTCCTTTCATGACAACTCGTCTTCTTTTGCAATATT 64754 Query 5695 TACGAGCTGGTTTGTGAAGCTCTTCAGCTAT 5725 | || ||| ||||||| || || | | |||| Sbjct 64755 TGCGTGCTTGTTTGTGTAGTTCATTAACTAT 64785 >seq138 Length=674825 Score = 89.7 bits (98), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 5331 TTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATAC 5390 ||||| |||||||| || |||||||||||||| ||||| | | || |||| ||||| Sbjct 212232 TTAAG-GTTCTATTAAATCGTTCACATATGGAGGCTTTCATTTGAGTGTATGTGGAATAA 212290 Query 5391 AGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCC 5450 |||| || | | | ||||||| |||||| || ||||| ||| |||| || || ||| Sbjct 212291 TGATTAATTTGATAATCTTTCATCAAATCTTTAAAATCTTTATTGAAAAATTCCTTTCCC 212350 Query 5451 TGATCA 5456 |||||| Sbjct 212351 TGATCA 212356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97971834601570