Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq234 196 5e-45 >seq234 Length=462357 Score = 196 bits (216), Expect = 5e-45 Identities = 471/712 (66%), Gaps = 10/712 (1%) Strand=Plus/Minus Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 |||| |||| ||| || | ||| || ||| |||||||||||| ||||| ||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || || || | || || | || | ||||||||| |||||| || ||| Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469 || || ||||| | | |||| | |||| || | | || ||||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAAC 280771 Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 || || ||||| ||||| ||||| |||||||| | ||| | ||||||||| ||| Sbjct 280770 ATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 280711 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGA 21588 |||||||| ||||||| ||| | || |||| ||||||||| || || || ||| || Sbjct 280710 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAA-GCTGCCACT 280652 Query 21589 AAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT 21648 |||||| || || || |||||||| || || | || || ||||| | ||| | Sbjct 280651 AAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAG---CCGA 280595 Query 21649 ATCC---AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT-CAATTGTAT 21704 || | ||||||| | ||||||| ||||| | |||| |||| ||||| | Sbjct 280594 ATGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAA-CCAATGGCATTGTCT 280536 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||| || || || |||| | ||| | | |||| | || Sbjct 280535 CAATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTA 280476 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 |||||||||||| || || | |||||| || || || ||||| || ||||| || | | Sbjct 280475 AACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAG 280416 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 | || | ||||||||| ||||||||| | || || ||||| || || |||| Sbjct 280415 CTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCAT 280356 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 | || |||||||| ||||| | || | ||||||| |||||| || |||| Sbjct 280355 CGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACC 280296 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||||||| | ||||| || | ||| || || |||| |||||||| Sbjct 280295 GATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAA 280244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531886139484200