Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq884 98.7 1e-15 seq192 98.7 1e-15 seq15 91.5 1e-13 seq19 86.0 6e-12 seq11 84.2 2e-11 >seq884 Length=18444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 71642 TATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAG 71701 ||||| ||| | |||||||||| || || || ||||| | |||||| | ||||| Sbjct 4111 TATAGCTTAGAGGAATTCGAGCAGGCTCGCACTCACGATGATTTGTGGAATTCAGCTCAA 4170 Query 71702 CGACAGCT-ACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAA 71760 | || | | || | ||||||||||| ||||| | | || ||||| ||||| ||||| Sbjct 4171 CTGCAATTGATGCGA-GAGGGTAAAATGCACGGTTTTTTGCGTATGTATTGGGCTAAAAA 4229 Query 71761 GATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGA 71820 |||| | || ||| || ||| || || | || | || | ||| | | |||| || Sbjct 4230 GATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAATTTTCGCTACTTTTAAATGA 4289 Query 71821 TAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||||||| | || || ||||| || |||||||||||| Sbjct 4290 TAGATACAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 4332 >seq192 Length=539225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||| ||||| | ||||||||||| |||| || || | ||||| | || | ||| Sbjct 278197 ACAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAAC 278256 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | ||||| ||||| | || ||| |||||| |||||||| || || || |||| Sbjct 278257 CCTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCG 278316 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 | || ||| || | |||| || ||| || ||| | ||||||| | | | | ||| | Sbjct 278317 ACCAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATT 278376 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||| |||||||||||||| || | ||||| || Sbjct 278377 ATAATATTCAAAAAGAATCCACCTTACATCTTGT 278410 >seq15 Length=3179940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 26750 TACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCAC 26809 || ||||||| | ||||||||| | || || ||||| | ||||| ||| | || || Sbjct 2518844 TAATTTTTAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTAC 2518903 Query 26810 CATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 26869 | ||| | || | |||||| || || | ||||| || ||| || ||||| Sbjct 2518904 TTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGA 2518963 Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||| ||||||||| | | |||| || ||||||||| | ||||||| | Sbjct 2518964 AGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACG 2519023 Query 26930 AAACGTCAGC-GACTATAACATTCAAAAAGAATCTAC 26965 | ||| | | ||||||||||| ||||| || || || Sbjct 2519024 CA-CGTTATCCGACTATAACATACAAAAGGAGTCGAC 2519059 >seq19 Length=2240402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||| |||||||||||||| ||| | || || | ||| | ||| || Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 931805 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | || ||| || ||| || || ||||| || || || ||| Sbjct 931806 TCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGAT 931865 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | |||| | ||||| ||| | ||||| | | | | | ||| || Sbjct 931866 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTAC 931925 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || || | ||| ||||||| Sbjct 931926 AACATTCAGAAGGAGTCGACATTGCATTTGGTCCT 931960 >seq11 Length=3471450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || || || || |||||||||||||||||||| |||| | ||||| ||||| ||| Sbjct 884002 AAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAACACTAACGGTTGCACTTCT 883943 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCAACTCTGCCGTTCGT 115314 || || | ||||||||| ||| || | | || || || |||| || | ||| Sbjct 883942 GCCGGTGCGCATTTTAATCCTTGCAAAAAAGAGCATGGAGCACCCACTGATGATGAGCGT 883883 Query 115315 CACGTCGGTGATCTTGGCAATATTGA 115340 || |||||||| | |||||| |||| Sbjct 883882 CATATCGGTGATTTGGGCAATGTTGA 883857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649206867600