Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq19 125 7e-24 seq192 116 3e-21 seq15 109 5e-19 seq145 96.9 3e-15 seq69 84.2 2e-11 >seq19 Length=2240402 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || ||||| | ||||||||||| ||||||||||||||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | |||||||| || | || ||||| ||||| || || || Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| |||| | ||||| Sbjct 933462 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACT 933403 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || ||||| ||||| Sbjct 933402 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || ||||| | ||||||||||| ||||| ||||||||| | Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | ||||| || || | || ||||||||||| || || || Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||| | || | || |||| | ||||| Sbjct 933690 ATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 933631 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || ||||| ||||| Sbjct 933630 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || ||||| | ||||||||||| ||||||||||||||| | Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | |||||||| || | || ||||| ||||| || || || Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 931856 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| ||| |||| | | | || | |||||| | | || | Sbjct 931855 ATACCTTCCTTATC-TTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAAC 931797 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || |||| ||||| || || || ||||| Sbjct 931796 TTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| ||| || || | || || |||||||| |||||||| || | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||| ||||| || |||| |||||||||||||| ||||| Sbjct 941590 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 941531 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | | | || | |||||| | || || | Sbjct 941530 ATACCTTCCTTGTCTTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGATTCCAC 941472 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTT 131219 || | || | ||||| ||||| | |||||| Sbjct 941471 CTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 |||||||| |||||||| || || |||||| || || | ||| ||||| || || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TG 131162 || |||||||||||||| ||||| || ||||| ||||| |||||| || || | | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTT-TGTTTTAACGTT 939734 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | |||||| | || || | || | || | ||||| ||||| | |||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 131223 GAAAATCTGCAT 131234 || || ||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 131042 ACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGT 131101 ||||||| ||||||||||||||| || ||||| ||| || | |||||||| || Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161 | || ||||| ||||| || || || || ||||| ||||| || || ||||| | Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGT 932050 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | ||| |||| | ||||| || | ||| | ||| || || || | ||||| | Sbjct 932049 TTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGA 931990 Query 131222 CGAAAATCTGCAT 131234 | ||||| ||||| Sbjct 931989 CAAAAATTTGCAT 931977 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || ||||| | ||||| || || ||||||||||| ||| Sbjct 939660 CCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAG 939601 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| | |||| ||| ||||| || |||| ||||| || || || || ||| Sbjct 939600 AGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 939541 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 | ||||||||| || ||| ||| | || | | | ||| | |||||||| | ||| | Sbjct 939540 ACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 939482 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || | || || ||||| | |||||| Sbjct 939481 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCAT 939434 >seq192 Length=539225 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| ||| | ||||| ||| || || |||||||| || |||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||||| || ||| | || || || |||||||| || || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | |||| | | || | ||| || | || |||| Sbjct 278308 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 278250 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || ||||| |||||||| ||||||||||| Sbjct 278249 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq15 Length=3179940 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| || || || || | |||||||||||||| ||||| || ||| Sbjct 2519090 GCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGA 2519031 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || | || ||||| ||| | || ||||| || || || ||||| Sbjct 2519030 TAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 2518971 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||||| ||||| | || | ||| |||| | ||| | Sbjct 2518970 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 2518911 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || |||||||| |||||||| ||||| Sbjct 2518910 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 >seq145 Length=640502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 480/754 (64%), Gaps = 9/754 (1%) Strand=Plus/Plus Query 145035 TCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCA 145094 |||| || | || ||| | |||||||| || |||||| || | || || || || Sbjct 131646 TCAAATCTTTAAGTAAATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTG 131705 Query 145095 AATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCG 145154 || | || || ||| | || |||||||||||||| || || || |||||||| || | Sbjct 131706 TGTAAATATTTGAAGTGTATGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAG 131765 Query 145155 TTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTT 145214 ||||| ||||| || |||| || |||||||||| || | || || ||||| | Sbjct 131766 ACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACTCCATAATTTTTAATGTCGT 131825 Query 145215 CCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCA 145274 | || || | ||||| |||||| ||| ||| | |||||||| || || || | Sbjct 131826 CTTTAAGAGCGGACCAATTCCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAA 131885 Query 145275 AAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCG 145333 || || | || | || || |||| | | | || || | || | | |||||| Sbjct 131886 GGATACCTTTACTAACTGGACTACCTTCATATGTTTCGT-ACGGACCGTATTGTTTGGCC 131944 Query 145334 AGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCT-GTTGAG 145392 | | ||||| || || | || ||| |||| ||||| || |||||| | || || Sbjct 131945 AATTGACAACTGGCTTCTAAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAG 132004 Query 145393 CAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCC 145452 | || || | ||||| ||||| || |||| | | | || || || | || Sbjct 132005 CGGC-CAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCC 132063 Query 145453 CTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGG 145512 || | || | ||||| || ||||| | || | || || | | || Sbjct 132064 TTGGACGCCTATACCGATTGGACGATGACGTAAATTAGATTTTCTGGCTTCCGGCAGCGG 132123 Query 145513 ATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCG 145572 ||| ||| ||||| ||||| || | ||| | || | ||||| || | Sbjct 132124 ATAGTAATTGACATCGATTATTTTGTTGAGGTTCCTTGTTATAAGCTTTGCAACTTCTTT 132183 Query 145573 CAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGA 145632 | || | ||| ||| | | || | || | ||| |||| | || || || Sbjct 132184 GAGTTTGTGAAAATCATATTGTTTATCTGCCGTTACGA-ACA--TATTCAACGCAATTGA 132240 Query 145633 CGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACA 145691 |||| ||| |||||||| | || || | || || | |||| ||||| || | |||| Sbjct 132241 TGCCAGATTGCAAACTGCTATTTCTTCAGCCGACG-TATATTCGACGATTTCTGTACACA 132299 Query 145692 AATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCT 145751 | || || ||||| || || || | ||| || ||||||||||| | ||| || ||||| | Sbjct 132300 AGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTACAAGCGTCTT 132359 Query 145752 TGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 |||| |||||||| || || |||||||| || Sbjct 132360 TGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTG 132393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 146401 ATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 ||| ||||| ||||| ||| |||||| ||||| |||||||| | |||||| ||||| | Sbjct 133012 ATAAGTTTCAATAGCCGCTTCAATGTCATCGCCGTGAATGCCAATAGCGACACGCATTAA 133071 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATA--GCCGTTCTCC 146518 ||| ||||| || |||||| | | || | |||||||||||| || ||||||| Sbjct 133072 CATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTTAACAAGTAAGACCGTTCT-- 133129 Query 146519 AGGGTTTTGTATCCGAAAAATTTGTA 146544 | ||||| | || ||||| || || Sbjct 133130 AAAGTTTTAAAGCCAAAAAAATTATA 133155 >seq69 Length=1091995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||||| | | | ||| || ||||| ||||||| ||||| || | | Sbjct 837498 CCACCAAGCAAACGTAAAATCATATGGATAGTCGAGCCCTTTTGTATGTTATAGTGCATT 837439 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||| || |||||||||||||| || || || || || | || | || ||| Sbjct 837438 AACGTGCAACCATCTTCTAGCTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGG 837379 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAG-CTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| | || |||| | || ||| | ||||||||| | ||| Sbjct 837378 ATGCCGTCCTTATCC-TGAATCTCCGCTTTAATCTTCTCAATAGTATCGGTCGGTTCGGC 837320 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || |||| ||||| |||||||||||||| Sbjct 837319 ATCTAAAGTGAGGGTATTGCCCGTTAACGTTTTCACGAAAATCTGCAT 837272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999790147200