Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19 138 8e-28 seq192 109 4e-19 seq15 105 4e-18 seq643 98.7 7e-16 seq170 98.7 7e-16 seq984 82.4 5e-11 >seq19 Length=2240402 Score = 138 bits (152), Expect = 8e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||| | || |||||| ||||| |||||||| | Sbjct 931977 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGG 931918 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || ||||| || || ||||| || | ||||| ||||| | || Sbjct 931917 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 931858 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || |||||| || ||||| | || |||||| ||||| Sbjct 931857 GAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAA 931798 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGC 38328 |||| || ||||||||||| || || || |||||||| || || ||||| ||||| || | Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTTTTAAAATC 931738 Query 38329 T 38329 | Sbjct 931737 T 931737 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||| | || |||||| |||||||||||||| | Sbjct 933812 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGG 933753 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || ||||| || |||||||| || | || || ||||| | || Sbjct 933752 ACAAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGG 933693 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| |||||| ||| || || | | || || | || | Sbjct 933692 GAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGA 933633 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || || || || ||||| ||||| || || || ||||| Sbjct 933632 CTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 105 bits (116), Expect = 4e-18 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| || |||||||| || || || || ||||| ||||| | Sbjct 939664 CATT-CCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGT 939606 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || | | ||||| ||||| || ||||| || | ||||||||||| | Sbjct 939605 CGGAGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTG 939546 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| |||||||| || |||||| || ||||||| | |||||| | Sbjct 939545 GTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCT 939486 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || |||||||| || ||||| || |||||||| | |||||| || Sbjct 939485 CAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTT 939431 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| || ||||| |||||||| || ||||| |||||||| || | Sbjct 941639 ACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCC 941580 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || ||||| || ||||| || | || || || || | || | ||||| || Sbjct 941579 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 941520 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| |||||| || || || | || |||||| ||| || || || || || Sbjct 941519 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGAT 941460 Query 38282 AGTTTTACCCGTCAAGGTTTT 38302 ||||| || ||||| ||||| Sbjct 941459 CGTTTTTCCGGTCAAAGTTTT 941439 >seq192 Length=539225 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||||||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| |||||||| || || | ||||| || |||| || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | || ||| || ||| || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || | || || || || ||||| | |||||| || || |||||||| || || Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTGTA 278196 >seq15 Length=3179940 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||| || || || || || || ||| | || || |||||||| || || || Sbjct 2519054 CTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAA 2518995 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | ||||||||||| | || | ||||||||| ||| |||||| ||| ||||| Sbjct 2518994 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 2518935 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| || | |||||||| || ||||||||||| || || | ||||| || Sbjct 2518934 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 2518875 Query 38306 GAATATCTGCATGTTT 38321 ||| || ||||| ||| Sbjct 2518874 GAAAATTTGCATTTTT 2518859 >seq643 Length=87239 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 32137 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 32078 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 32077 GGTTATATTTAG 32066 >seq170 Length=571011 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 |||||| | | || || || |||||||| | || ||||| || || |||||||| Sbjct 415225 GATGGGTTCGGTTAATGTGAACCGTAATGTTACCGATATTTTCTATCGTTATAAAATGCC 415166 Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278 ||| | ||| ||||| ||||| ||||| || || || |||||||| || || || || Sbjct 415165 GCG--TTTGCAAGCCAAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAAT 415108 Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338 ||| | ||||| || || | ||||| || || || || || || ||||| || || Sbjct 415107 ATGGCCGAAGTGGCACGAGCCATAGGACGACCAGCGACTTATCCAACCAAATACTTTGGT 415048 Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGAT 6368 || ||| | || ||||| || | ||||||| Sbjct 415047 TGTGAATTGGGTGCTCAAACTCTGTTTGAT 415018 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| ||||| || || || || | ||||| | || || | ||||| Sbjct 414925 AACGAGCGTTTCATTGTTAATGGCTCCCACGACGCAGCCAAATTACAAGATCTCCTTGAT 414866 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || ||||| ||||| ||||| | |||| ||||||||||| ||||| || || |||| Sbjct 414865 GGTTTTATACGCAAATTTGTCTTATGTCCTGAATGCGATAATCCGGAAACTGATCTTACA 414806 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| | || || || ||| || ||||| ||||| | |||||| | Sbjct 414805 GTTTCACCTAAGAATCAAACTATATCGCAGTCTTGTAAAGCATGCGGATTTCATGGCTTG 414746 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | || || | || || ||||| |||| ||||| ||| Sbjct 414745 CTTAAGGTCAATCATAAGGTGAATACTTTCATTTTGAAAAATCCACCA 414698 >seq984 Length=4229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 25945 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938198817355