Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq145 500 1e-136 seq234 273 3e-68 seq132 138 1e-27 seq624 84.2 3e-11 >seq145 Length=640502 Score = 500 bits (554), Expect = 1e-136 Identities = 1392/2118 (66%), Gaps = 48/2118 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || || | ||| || || |||||| | ||| || ||||| | |||||| ||||| || Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||||| ||| ||||| || |||||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || |||| || ||||| | ||||||||||| ||||| || || || | || ||||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 || || || | | ||| | ||||||||||| |||||||| | | || ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 62081 TCTGGAAGGTTTG-------TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 |||| |||| || | || || || || || | || ||||| || || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || | ||||||||| | || || ||| || |||| | ||| |||| ||||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 ||| || ||||||| ||| | || ||||||||||| || || || || | ||| Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 ||| || || || | |||||||||||| || || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 62314 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62373 ||| | | || || || | || | ||||| |||| ||||||||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62432 || ||| || ||||| ||||| | | || | ||| ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA-CCTTCAT 131915 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 |||| ||||| || || | | | || | || |||||| || ||||| |||||||||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGC-GCTTCCAGGCTATCAAATGGATAA 62551 | || ||||| || || | ||||||| | | | || | ||| || | |||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTA-AGCGGCCAGCATTTTCGCTTTCGTAGGGATAA 132034 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | ||| | ||||| || |||||||| || || |||||||| || | ||| | Sbjct 132035 CGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGT 132094 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 |||||| || ||||| || | ||||| ||||| | ||| || ||||| ||||| Sbjct 132095 AAATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGG 132154 Query 62672 TTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA- 62729 || || || | ||||| | || || || |||||| |||||||| || | |||| Sbjct 132155 TTCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGC 132213 Query 62730 --TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 |||| ||||| ||||| |||| ||||||||||| ||||| |||| || | ||| Sbjct 132214 CGTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGA 132273 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 || ||||| | || || || || | ||||| || || || || || | ||| ||||| Sbjct 132274 CGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTG 132333 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 |||||| || |||||| || || || ||||| ||| | ||||| || || || | || Sbjct 132334 ATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTG 132393 Query 62908 AG-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 62966 | | || || || ||| | | | ||||| | |||| | ||||| || |||| Sbjct 132394 GGCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTA 132448 Query 62967 CTCT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 | || ||| ||| | | |||||| || || | |||||| |||| | |||| Sbjct 132449 CCCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAG 132508 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 ||||| |||| || || ||||| | ||||| | | ||| ||| ||||| |||||| Sbjct 132509 CCAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATG 132568 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || ||||| || ||||| ||||| ||||| || | | | || ||||| || || Sbjct 132569 AACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCC 132628 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 ||||| ||||| | || || || | | |||||| | ||||| || || |||||||| Sbjct 132629 GTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATA 132688 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | | || || ||||| || || || || | || | || || || | Sbjct 132689 GCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAAC 132748 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 | | |||||| |||| || ||| | || | | | | || || | | | || Sbjct 132749 AAACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCT 132808 Query 63323 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 | || || || | ||| |||||||||||| || ||| ||||| ||| || Sbjct 132809 TTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCA 132868 Query 63383 CATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 ||| | | || | ||||| || || || | || || ||| | || | || Sbjct 132869 CATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAGAA 132927 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 ||| |||| ||| | || | || | ||| |||||| || || ||||| ||||| Sbjct 132928 GCAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGT 132987 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--A 63559 ||| | | || | ||||| || || |||||||| | || || | ||| | Sbjct 132988 AAAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCG 133045 Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63619 ||||| || | ||||||||||||||||| || || |||| || || || || || Sbjct 133046 TGAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTA 133105 Query 63620 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 || || |||||||| || ||| ||||||||||| |||||| | || || ||| || Sbjct 133106 ATCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCG 133165 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGG 63737 || || ||||||||| | || || | | ||| || || | || || | |||| Sbjct 133166 CGATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCTTGTAATGG 133225 Query 63738 TAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAAT 63797 ||| | || |||||||| || | ||||| || ||| || |||||| Sbjct 133226 AAATCC--GATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAAT 133277 Query 63798 CCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 63857 | ||||||||| |||| ||| ||||||||||| || | ||||| || || || | Sbjct 133278 CAGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATAC 133337 Query 63858 TAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCT 63916 ||||||| ||| ||||| | ||| || | || || || | ||| || |||| || Sbjct 133338 GTGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCA 133396 Query 63917 GCCAGAGTGTCCAATTCT 63934 || | | | ||||||||| Sbjct 133397 GCTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 273 bits (302), Expect = 3e-68 Identities = 498/724 (69%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || | | ||||| | ||| | || | ||| |||| |||||| || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 32595 GCGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 32651 || |||||||| || || | | ||| ||| ||||||| | | ||||||||| Sbjct 280830 GCATCTGTTATTATT--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATCAAATGTTTA 280774 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||||| || || || || ||||| | || || || | || | ||| || || Sbjct 280773 AACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAG 280714 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 280713 AATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCA 280654 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-- 32829 |||||| || ||||| || || || || || || | | ||| ||| || || Sbjct 280653 CTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAA 280594 Query 32830 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 || ||| |||||| | ||||||| || |||||||| || || | ||||||||||| Sbjct 280593 TGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 280534 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || |||||||| ||||| | ||| || ||| | | |||||| || || | | | Sbjct 280533 ATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAA 280474 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||||||||| || | ||||| ||||| |||||||| || || ||||| | ||| Sbjct 280473 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 280414 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 ||||| || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 280413 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 280354 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || |||||||| ||||| |||||| ||||||| |||| | ||| | Sbjct 280353 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGA 280294 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 |||||||| | || |||||||| | ||| || || || | |||||||| || || || Sbjct 280293 TTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCC 280234 Query 33189 GCCT 33192 |||| Sbjct 280233 GCCT 280230 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249 ||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| | || Sbjct 278499 CCTTTTTATACATCTTCCATATGTCAGGATATTGAATTGGAAAAATGACAAAACGTTTGA 278440 Query 33250 GATTTTTTGCAAGGATTGGTTCCAT 33274 |||||| | ||| | ||| || || Sbjct 278439 GATTTTCTTTAAGCAATGGCTCTAT 278415 >seq132 Length=759884 Score = 138 bits (152), Expect = 1e-27 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 63582 ||||| || |||||||||| || || || || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 |||||| || || |||| || || || || || || ||||||||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 |||||||| || |||||| | ||||| ||| || || || |||||||| |||| || Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 63703 GAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATAATAGGAAAA 63760 || ||| || | | || || | |||||||| | || |||| ||| || Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCTTGTAATGGTAATCC--GATATAACAGGGGAA 237 Query 63761 TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63820 || ||||| | || | | | || || ||| ||||||||| |||| | Sbjct 238 TGAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATACT 291 Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || ||||||||||| || | |||||||| || || | |||||||| ||| ||||| || Sbjct 292 TTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCT 351 Query 63881 GGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 || || | || || || | ||| || ||||||| || | | | ||||||||| ||| Sbjct 352 GGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGT 410 Query 63940 TGTTACACC 63948 || || || Sbjct 411 GGTGACGCC 419 >seq624 Length=93322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27515 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 27574 ||||| || ||||| ||||| || || ||||| |||||||| || ||||| | ||||| | Sbjct 17294 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTCGCACTTCCCACATAAAAA 17235 Query 27575 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 || ||||||| | ||| ||||||||||| | |||||||| Sbjct 17234 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 17191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614535518000