Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq192 138 1e-27 seq19 131 1e-25 seq15 104 2e-17 >seq192 Length=539225 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 278202 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 278261 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| || | ||| |||||||| || |||||||| ||| Sbjct 278262 GACACTATCGAA--AATGTAAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGAC 278318 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| ||||| || ||||| ||||||| |||||| || |||||| Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||||||||||||||| ||||| | ||| Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTG 278411 >seq19 Length=2240402 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || ||||||||||| ||| | ||||| | || ||||| || || Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | || ||||||| ||||| ||||| ||||| || ||||| Sbjct 939721 GGATACTATCGAAAACGTTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 939780 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| |||||||| || ||||||| ||||| || || ||||| Sbjct 939781 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAA 939840 Query 25178 TATTCAAAAAGA 25189 || ||||| || Sbjct 939841 CATACAAAAGGA 939852 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || ||||||| | ||||| ||| | || Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || |||| ||| ||||| ||||| ||||| || || Sbjct 933644 GACACCATTGAAAACGTCA---AGGCTAAAATTCAG-GACAAGGAAGGTATTCCCCCAGA 933699 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||||||||| || ||||| ||||| | ||||| || |||||| Sbjct 933700 TCAGCAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTA 933759 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||| || || || || | ||||| || ||| Sbjct 933760 CAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTA 933796 Score = 122 bits (134), Expect = 8e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG-AGTC 25072 || ||||||||||| ||| | ||||| | || ||||| || || || ||||||| | | Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 25073 ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTT 25132 | |||| ||||||| ||||| ||||| ||||| || ||||| ||||| | || || Sbjct 941499 GTTAAAGC-AAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTT 941557 Query 25133 TGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATC 25192 ||| |||||||| || ||||||| ||||| || || ||||| || ||||| ||||| Sbjct 941558 TGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATC 941617 Query 25193 CACGCTACATTTAGTG 25208 || || || || ||| Sbjct 941618 TACTCTCCACTTGGTG 941633 >seq15 Length=3179940 Score = 104 bits (114), Expect = 2e-17 Identities = 158/222 (71%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 24978 TAATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATC 25037 |||||| || || | || ||||||||| || || || ||| | || || ||| | || Sbjct 2518844 TAATTTTTAGAATAT--AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATT 2518901 Query 25038 ACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGA 25093 || | ||||| ||| | || |||||||| || |||| | || |||| ||| || Sbjct 2518902 ACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCA---AGGCCAAAATTCAG-GA 2518957 Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 |||||||| ||||| || || ||||| || | ||||| || ||||||||||| ||||| Sbjct 2518958 TAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA 2519017 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 || ||||| | ||| || || || ||||| || || || Sbjct 2519018 TGGACGCACGTTATCCGACTATAACATACAAAAGGAGTCGAC 2519059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316354987075