Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq234 320 2e-82 seq251 123 3e-23 seq689 107 2e-18 seq449 82.4 9e-11 >seq234 Length=462357 Score = 320 bits (354), Expect = 2e-82 Identities = 497/702 (71%), Gaps = 6/702 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTA 92984 ||| || ||| ||||||| || | |||| || | ||||| || | ||| || | Sbjct 280930 ATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 280872 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | |||| || || ||||| || ||||| || ||| |||||| ||| | | ||||| | Sbjct 280871 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 280812 Query 93045 TTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | || | ||| | |||||||||| | || || ||||||| |||||| || Sbjct 280811 AAA-TCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCA 280753 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || ||||| || |||||||||| ||||| ||||||||||||||| | | | Sbjct 280752 CAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 280693 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||||||||| ||||| || || ||| ||| ||||||||||| ||| Sbjct 280692 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAATATACCTTCGACG 280633 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATCCATTTTAA 93282 || || || || | | ||| || ||||||| || |||| || | ||||| || Sbjct 280632 GCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGCGATGAT-ATCCAAGCTAG 280574 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||| || || || ||||||| | || | ||| || || || |||||||| || || Sbjct 280573 AGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTC 280514 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || || | ||| || ||||| ||||| | | | ||||||||| || || || Sbjct 280513 ACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGCAC 280454 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| ||||| |||||||| || || || || || | |||||| || || || || ||||| Sbjct 280453 ATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCGGTTATTTGAACCTCTTG 280394 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||||| || || | ||| ||||| || |||||||||||||| |||||||||||||| Sbjct 280393 GGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAA 280334 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | ||| |||||||| || | || | | | || ||||||| | ||||| Sbjct 280333 AACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATTCCAATCGTCCATGTCTTT 280274 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || ||||| || || || |||||||||| || ||||| || Sbjct 280273 AGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGC 280232 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||| ||||| | ||||||||| |||||||||||||||| ||||||||||| || | Sbjct 278497 TTTTTATACATCTTCCATATGTCAGGATATTGAATTGGAAAAATGACAAAACGTTTGAGA 278438 Query 93686 TTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || ||||| || || ||||||| | || ||||| Sbjct 278437 TTTTCTTTAAGCAATGGCTCTATTGACGGATCAAA 278403 >seq251 Length=439826 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 127597 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 127538 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 127537 GTGGGTTCGAACCCCACACCTGACA 127513 Score = 116 bits (128), Expect = 4e-21 Identities = 78/85 (92%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGC 126322 |||||||||||||||| ||| |||||||||||||||||| |||||||||| | ||||| Sbjct 165915 AGTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 165973 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 165974 GTGGGTTCGAACCCCACACCTGACA 165998 Score = 111 bits (122), Expect = 2e-19 Identities = 77/85 (91%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGC 126322 |||||||||||||||| ||| |||||||||||||||||| |||||||| | | ||||| Sbjct 126657 AGTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGAGC 126599 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 126598 GTGGGTTCGAACCCCACACCTGACA 126574 >seq689 Length=69493 Score = 107 bits (118), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 |||||||||| | || || ||||||| ||| || || || || ||||| || Sbjct 34937 GGTTTTTGTATCAAATT-TTAAACATTAATACCGCTAATTCACAGTGCAAGCCTTCATCG 34879 Query 93122 CGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAA 93181 || ||||||| ||||| ||||||||||| || | | | | |||||||| | ||| Sbjct 34878 CGGGATATCATTTCATTAGAGAATGTTAAACTCGGCATTATTTCACGTTTCTTTACTCAA 34819 Query 93182 AATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATA 93241 ||||| ||||| || || ||| ||| ||||||||||| |||| || || || ||| Sbjct 34818 AATATCGAAGCGAAGCTGCCACTAAAGAATATACCTTCGGCGGCAGCGAAAGCTTTGATA 34759 Query 93242 CGTTCGGCAAAATTTGCGGAAT-TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 |||| ||||||| || |||| || | ||||| || |||||| || || || || Sbjct 34758 TGTTCACCAAAATTAGCCGAATGCGATGAT-ATCCAAGCTAGAGCCCATTCCGCCTTCTT 34700 Query 93301 CTTAA 93305 ||||| Sbjct 34699 CTTAA 34695 >seq449 Length=188726 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 162747 AATTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGATGCTCTAACC 162806 |||| |||| |||||| || ||||||||||| || || || |||||| |||||| ||| Sbjct 76834 AATTGCCTCCTGTGAGGATTGAACTCACGACCACTGGTTTACAAGACCAGTGCTCT-ACC 76776 Query 162807 ACTGAGCTAAAGAGGCTACA 162826 |||||||||||||||| ||| Sbjct 76775 ACTGAGCTAAAGAGGCCACA 76756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845451524200