Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq145 172 5e-38 seq192 158 1e-33 seq19 154 1e-32 seq15 122 7e-23 >seq145 Length=640502 Score = 172 bits (190), Expect = 5e-38 Identities = 857/1335 (64%), Gaps = 56/1335 (4%) Strand=Plus/Plus Query 128911 ATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAA 128970 |||||||||||||||||||| || ||||| | ||||||||| ||||||| || Sbjct 131453 ATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCATGTTGATGGTT 131512 Query 128971 TTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCT 129030 ||||| |||||||| |||||||| || | ||| | | ||||| | Sbjct 131513 GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTGGCAGGTATGGCA 131572 Query 129031 TCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTAC 129090 |||||||| || | |||| | ||| | ||| |||| ||| | || || | Sbjct 131573 TCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCCAA 131632 Query 129091 AAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATT----ACTTGAAAGTCACC 129146 | || || ||||||| | ||||| || | ||| || ||| ||||| Sbjct 131633 AGGCCCAATTCAGTCAAATCTTT----AAGTAAATGATGATTGACTACGATAAACTCACC 131688 Query 129147 CGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCC 129206 | || ||||| || |||||| || ||| | |||||||| || || ||||| || Sbjct 131689 AGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGACTCGTTGTTACC 131748 Query 129207 TAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAGTTTCGCAAA 129264 | |||||||| || | |||||| ||||| ||| || |||||| | || |||| Sbjct 131749 AAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAG--AATTGCGCACT 131806 Query 129265 CCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTGGGTGTGT 129322 || | | ||||||||| | ||| | | ||| | ||| | ||| || || || | Sbjct 131807 CCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATA--GATCAGTAGGCGTTT 131864 Query 129323 GATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGT 129382 || ||||| || ||||| | ||||| ||| | ||||| || | |||| Sbjct 131865 TATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTCGT 131924 Query 129383 GCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTT 129442 | ||||| ||| ||||||| ||||| ||||| || || || |||| ||||||| Sbjct 131925 ACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATATATTGTTT 131984 Query 129443 CGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGG 129502 | ||||| | || || || | ||||||||||| || ||||| | Sbjct 131985 CAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAA 132044 Query 129503 CAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATT 129562 | || ||| || || ||||| | || | |||||| || ||||| | ||| |||| Sbjct 132045 TTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATTAGATT 132104 Query 129563 TT-TG--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGA 129619 || || | ||| || | |||||||| |||| || || |||||||| | ||| | Sbjct 132105 TTCTGGCTTCCGGCAGC---GGATAGTAATTGACATCGATTATTTTGTTGAGGTTCCTTG 132161 Query 129620 CCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCG- 129678 | || || | || | ||| | | | ||||| || | | ||| || || Sbjct 132162 TTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATT---GTTTATC--TGCCGT 132216 Query 129679 -ACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC-AC 129736 || || ||| | ||| || |||| |||||| || || |||| || | | || Sbjct 132217 TACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTC--TTCAGCCGAC 132274 Query 129737 -TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795 | || ||||| ||||| | ||||| ||||| ||| || ||||| | || || |||| Sbjct 132275 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 132334 Query 129796 TTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTT-- 129853 |||||||| ||| ||||| |||||||| | |||||| || || || || || |||| Sbjct 132335 TTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGG 132394 Query 129854 GCGTTTCGACAATG-GTCCTGAACAAGTCTCGAGCCTTGATCTGTCT--TACAAATTTGC 129910 ||| | | | | || | | ||||||| |||| |||| ||| | | | || | Sbjct 132395 GCGCTGC-ATATTGCGAAC--CACAAGTCACGAG-CTTGTATTGTTTTGTTCGCTTTACC 132450 Query 129911 CACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTAC-GGTGTCGAGC 129969 | | | | || ||| | |||| || ||||||| || | || | | ||| Sbjct 132451 CTCGTCT-TCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 129970 AACGGCGATTCACGCGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCAT 130028 | ||| ||| | | || ||||| | | ||| || | |||| || || |||| |||||| Sbjct 132510 CAGGGC-ATTTATGGGGGCACATTAGAGACCA-ATGCTCATCAGCCTCCACTCTTTTCAT 132567 Query 130029 AAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGC--- 130085 |||| ||| |||| |||||| || || || || || || || | |||||| | Sbjct 132568 GAACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGC---ACGATCCTCCTCTTT 132624 Query 130086 ACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145 |||| | || ||||| | || || ||| |||| || |||||||| || || | || Sbjct 132625 ACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTA 132684 Query 130146 AATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTT 130202 || || | || ||| ||||| || |||||||| || | || | ||||||| Sbjct 132685 TATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTT 132744 Query 130203 GTAGACTCGCAACAT 130217 | | | |||||||| Sbjct 132745 GAACAAACGCAACAT 132759 >seq192 Length=539225 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| |||| || || || |||||||||| || ||| || Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || ||||| ||||| ||||| ||||||||||| Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||| | || || ||||| || || || || ||| ||||| | |||||||| Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||||||||||| ||||| | || ||||| ||||| || || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 >seq19 Length=2240402 Score = 154 bits (170), Expect = 1e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 |||| ||| |||||||| ||||| ||||| ||||| || ||||| | ||| | ||||| Sbjct 931739 ATTTTAAAAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGT 931798 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 ||| | | ||||| | || || | ||| ||||||||||| ||||| |||||||| Sbjct 931799 TGAACCATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCC 931858 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || ||||| |||||| | || ||||| ||||| || || || || |||||| | || Sbjct 931859 CCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTC 931918 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||| || || || || | ||||| || | || ||||||| ||| Sbjct 931919 CGATTACAACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGT 931976 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22234 AAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGAT 22293 |||||||| ||||| |||||| ||||| | || |||||| | | ||||| | || | Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 22294 ATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTT 22353 | ||| |||||| ||||||||||| |||||||| || || || || ||| | || ||| Sbjct 941499 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 941558 Query 22354 GCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCC 22413 || ||||||||||| || ||| ||||| | || || |||||||| ||||| ||||| Sbjct 941559 GCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATCT 941618 Query 22414 ACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || | || || || ||||| | ||||||||| Sbjct 941619 ACTCTCCACTTGGTGTTGCGTCTCCGCGGAGGT 941651 Score = 141 bits (156), Expect = 8e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| ||||| |||||| ||||| | || |||||| | | Sbjct 939662 ATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCG 939721 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||| ||||||||||| |||||||| || || || Sbjct 939722 GATACTATCGAAAACGTTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 939781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| || ||| ||||| | || || |||||| Sbjct 939782 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAAC 939841 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 939842 ATACAAAAGGA 939852 Score = 140 bits (154), Expect = 3e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 |||| | || ||||| | || || || || || || || ||||| |||| | || || Sbjct 939424 ATTTTTTAAAATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGT 939483 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 || | ||||||| | || || | ||| ||||||||||| || || || | || Sbjct 939484 TGAGCCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCC 939543 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 ||| |||||||||||| | || ||||| |||||||||||||| || |||||| |||| Sbjct 939544 ACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTC 939603 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| ||||||||||| |||||||| || | ||||| ||||| || Sbjct 939604 CGACTACAACATTCAGAAAGAATCGACGCTCCATTTGGTTTTACG 939648 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || || || |||| || ||||| || | || Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| |||||||| |||||||| |||||||| || ||||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || || || || || |||||| | ||||||||||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || || || | ||||| || | || ||||||| ||| || Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGTATT 933814 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || || || |||| | ||||| || | || Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || |||||||||||||| |||||||| || ||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || || || || |||||| | |||||||||||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||||| || | || ||||||| ||| Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGT 933583 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || || || |||| | ||||| || | || Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || |||||||||||||| |||||||| || ||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || || || || ||||| | |||||||||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 932157 ATTCAGAAGGA 932167 >seq15 Length=3179940 Score = 122 bits (134), Expect = 7e-23 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||||||||| ||||||||| | || || ||||| | ||| | ||||| || Sbjct 2518858 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 2518917 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| || | || || |||| |||||||| || || || || ||||| || | Sbjct 2518918 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 2518977 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||||||||| | || || || |||||||| || || ||| ||||| | ||||| | Sbjct 2518978 ATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACT 2519037 Query 22394 ACAACATTCAAAAAGAATCCAC 22415 | ||||| ||||| || || || Sbjct 2519038 ATAACATACAAAAGGAGTCGAC 2519059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716720465825